(25 nodes) Structural constituent of nuclear pore network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NUP54	Nucleoporin 54. (567 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	NUP62	Nucleoporin 62. (573 aa)
	nup210	Nucleoporin 210. (1857 aa)
	pom121c	POM121 transmembrane nucleoporin. (1184 aa)
	nup153	Nucleoporin 153. (1528 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2164 aa)
	nutf2	Nuclear transport factor 2. (127 aa)
	nup88	Nucleoporin 88. (719 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (298 aa)
	LOC103371405	Uncharacterized protein. (425 aa)
	LOC103371605	NTF2 domain-containing protein. (130 aa)
	nup58	Nucleoporin 58. (599 aa)
	NUP214	Nucleoporin 214. (1979 aa)
	nup160	Nucleoporin 160. (1123 aa)
	nup155	Nucleoporin 155. (1367 aa)
	nup188	Nucleoporin 188. (1713 aa)
	LOC103368977	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (794 aa)
	LOC103370131	Translocated promoter region a, nuclear basket protein. (1853 aa)
	ndc1	NDC1 transmembrane nucleoporin. (640 aa)
	nup205	Nucleoporin 205. (1993 aa)
	nup93	Nucleoporin 93. (671 aa)
	nup133	Nucleoporin 133. (1137 aa)
	nup98	Nucleoporin 98. (1839 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (858 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103368977	LOC103370131	ENSSPAP00000007535	ENSSPAP00000008697	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Translocated promoter region a, nuclear basket protein.	0.860
LOC103368977	LOC103371405	ENSSPAP00000007535	ENSSPAP00000025014	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Uncharacterized protein.	0.963
LOC103368977	LOC103371605	ENSSPAP00000007535	ENSSPAP00000026051	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	NTF2 domain-containing protein.	0.499
LOC103368977	NUP214	ENSSPAP00000007535	ENSSPAP00000004542	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 214.	0.983
LOC103368977	NUP54	ENSSPAP00000007535	ENSSPAP00000005263	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 54.	0.987
LOC103368977	NUP62	ENSSPAP00000007535	ENSSPAP00000008713	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 62.	0.986
LOC103368977	ndc1	ENSSPAP00000007535	ENSSPAP00000008811	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	NDC1 transmembrane nucleoporin.	0.981
LOC103368977	nup107	ENSSPAP00000007535	ENSSPAP00000019097	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.990
LOC103368977	nup133	ENSSPAP00000007535	ENSSPAP00000014180	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 133.	0.985
LOC103368977	nup153	ENSSPAP00000007535	ENSSPAP00000019808	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 153.	0.978
LOC103368977	nup155	ENSSPAP00000007535	ENSSPAP00000006429	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 155.	0.989
LOC103368977	nup160	ENSSPAP00000007535	ENSSPAP00000002218	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 160.	0.976
LOC103368977	nup188	ENSSPAP00000007535	ENSSPAP00000006680	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 188.	0.990
LOC103368977	nup205	ENSSPAP00000007535	ENSSPAP00000008882	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 205.	0.995
LOC103368977	nup210	ENSSPAP00000007535	ENSSPAP00000028643	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 210.	0.937
LOC103368977	nup35	ENSSPAP00000007535	ENSSPAP00000024217	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.980
LOC103368977	nup58	ENSSPAP00000007535	ENSSPAP00000004641	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 58.	0.979
LOC103368977	nup85	ENSSPAP00000007535	ENSSPAP00000019666	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.984
LOC103368977	nup88	ENSSPAP00000007535	ENSSPAP00000024041	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 88.	0.974
LOC103368977	nup98	ENSSPAP00000007535	ENSSPAP00000018947	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 98.	0.990