(23 nodes) Telencephalon cell migration network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arl13b	ADP-ribosylation factor-like 13b. (432 aa)
	cdk5r2	Cyclin-dependent kinase 5, regulatory subunit 2b (p39). (295 aa)
	efhc1	EF-hand domain (C-terminal) containing 1. (614 aa)
	cntn2	Contactin 2. (1040 aa)
	ENSSPAP00000025192	EGF-like domain-containing protein. (359 aa)
	LOC103371363	SUN domain-containing protein. (631 aa)
	cdk5r1	Cyclin-dependent kinase 5 activator. (335 aa)
	SRF	Serum response factor. (601 aa)
	LOC103366192	Fork-head domain-containing protein. (342 aa)
	ENSSPAP00000007316	Forkhead box G1a. (345 aa)
	LOC103371139	Uncharacterized protein. (268 aa)
	dcx	Uncharacterized protein. (351 aa)
	htr6	5-hydroxytryptamine (serotonin) receptor 6; Belongs to the G-protein coupled receptor 1 family. (445 aa)
	BMERB1	BMERB domain containing 1. (199 aa)
	ENSSPAP00000018210	EGF-like domain-containing protein. (95 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2421 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC103360124	Cyclin-dependent kinase 5 activator. (330 aa)
	SRF-2	Serum response factor. (478 aa)
	pex13	Peroxisomal biogenesis factor 13. (434 aa)
	disc1	DISC1 scaffold protein. (848 aa)
	RELN	Reelin. (3451 aa)
	LOC103353152	Fork-head domain-containing protein. (405 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000007316	LOC103353152	ENSSPAP00000007316	ENSSPAP00000020895	Forkhead box G1a.	Fork-head domain-containing protein.	0.824
ENSSPAP00000007316	SRF	ENSSPAP00000007316	ENSSPAP00000008430	Forkhead box G1a.	Serum response factor.	0.534
ENSSPAP00000007316	SRF-2	ENSSPAP00000007316	ENSSPAP00000022505	Forkhead box G1a.	Serum response factor.	0.534
LOC103353152	ENSSPAP00000007316	ENSSPAP00000020895	ENSSPAP00000007316	Fork-head domain-containing protein.	Forkhead box G1a.	0.824
LOC103353152	LOC103366192	ENSSPAP00000020895	ENSSPAP00000008049	Fork-head domain-containing protein.	Fork-head domain-containing protein.	0.827
LOC103353152	SRF	ENSSPAP00000020895	ENSSPAP00000008430	Fork-head domain-containing protein.	Serum response factor.	0.534
LOC103353152	SRF-2	ENSSPAP00000020895	ENSSPAP00000022505	Fork-head domain-containing protein.	Serum response factor.	0.534
LOC103360124	LOC103371139	ENSSPAP00000012855	ENSSPAP00000007218	Cyclin-dependent kinase 5 activator.	Uncharacterized protein.	0.401
LOC103360124	cdk5	ENSSPAP00000012855	ENSSPAP00000015780	Cyclin-dependent kinase 5 activator.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.979
LOC103366192	LOC103353152	ENSSPAP00000008049	ENSSPAP00000020895	Fork-head domain-containing protein.	Fork-head domain-containing protein.	0.827
LOC103366192	SRF	ENSSPAP00000008049	ENSSPAP00000008430	Fork-head domain-containing protein.	Serum response factor.	0.534
LOC103366192	SRF-2	ENSSPAP00000008049	ENSSPAP00000022505	Fork-head domain-containing protein.	Serum response factor.	0.534
LOC103371139	LOC103360124	ENSSPAP00000007218	ENSSPAP00000012855	Uncharacterized protein.	Cyclin-dependent kinase 5 activator.	0.401
LOC103371139	cdk5	ENSSPAP00000007218	ENSSPAP00000015780	Uncharacterized protein.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.979
LOC103371139	cdk5r1	ENSSPAP00000007218	ENSSPAP00000023176	Uncharacterized protein.	Cyclin-dependent kinase 5 activator.	0.402
SRF	ENSSPAP00000007316	ENSSPAP00000008430	ENSSPAP00000007316	Serum response factor.	Forkhead box G1a.	0.534
SRF	LOC103353152	ENSSPAP00000008430	ENSSPAP00000020895	Serum response factor.	Fork-head domain-containing protein.	0.534
SRF	LOC103366192	ENSSPAP00000008430	ENSSPAP00000008049	Serum response factor.	Fork-head domain-containing protein.	0.534
SRF	SRF-2	ENSSPAP00000008430	ENSSPAP00000022505	Serum response factor.	Serum response factor.	0.834
SRF-2	ENSSPAP00000007316	ENSSPAP00000022505	ENSSPAP00000007316	Serum response factor.	Forkhead box G1a.	0.534