17 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cnot3	CCR4-NOT transcription complex, subunit 3a. (891 aa)
	cnot6l	CCR4-NOT transcription complex, subunit 6-like. (553 aa)
	lrrc27	Uncharacterized protein. (428 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (249 aa)
	cnot1	CCR4-NOT transcription complex, subunit 1. (2333 aa)
	CNOT9	CCR4-NOT transcription complex subunit 9. (299 aa)
	cnot10	CCR4-NOT transcription complex, subunit 10. (755 aa)
	LOC103366440	NOT2_3_5 domain-containing protein. (536 aa)
	cnot4	CCR4-NOT transcription complex, subunit 4a. (798 aa)
	LOC103366853	CCR4-NOT transcription complex, subunit 7. (248 aa)
	cnot6	CCR4-NOT transcription complex, subunit 6a. (559 aa)
	LOC103366045	CCR4-NOT transcription complex, subunit 3b. (929 aa)
	cnot8	CCR4-NOT transcription complex, subunit 8. (285 aa)
	cnot2	CCR4-NOT transcription complex, subunit 2. (451 aa)
	ENSSPAP00000008883	Uncharacterized protein. (58 aa)
	cnot11	CCR4-NOT transcription complex, subunit 11. (445 aa)
	LOC103363318	CCR4-NOT transcription complex subunit 9. (297 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT7	CNOT9	ENSSPAP00000025133	ENSSPAP00000021074	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex subunit 9.	0.973
CNOT7	ENSSPAP00000008883	ENSSPAP00000025133	ENSSPAP00000008883	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.915
CNOT7	LOC103363318	ENSSPAP00000025133	ENSSPAP00000004538	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex subunit 9.	0.973
CNOT7	LOC103366045	ENSSPAP00000025133	ENSSPAP00000001851	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 3b.	0.966
CNOT7	LOC103366440	ENSSPAP00000025133	ENSSPAP00000018544	CCR4-NOT transcription complex subunit 7.	NOT2_3_5 domain-containing protein.	0.943
CNOT7	cnot1	ENSSPAP00000025133	ENSSPAP00000024988	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 1.	0.983
CNOT7	cnot10	ENSSPAP00000025133	ENSSPAP00000019313	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 10.	0.928
CNOT7	cnot11	ENSSPAP00000025133	ENSSPAP00000006770	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 11.	0.930
CNOT7	cnot2	ENSSPAP00000025133	ENSSPAP00000008928	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 2.	0.943
CNOT7	cnot3	ENSSPAP00000025133	ENSSPAP00000005007	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 3a.	0.966
CNOT7	cnot4	ENSSPAP00000025133	ENSSPAP00000016382	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 4a.	0.981
CNOT7	cnot6	ENSSPAP00000025133	ENSSPAP00000000198	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 6a.	0.923
CNOT7	cnot6l	ENSSPAP00000025133	ENSSPAP00000030583	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 6-like.	0.932
CNOT7	cnot8	ENSSPAP00000025133	ENSSPAP00000010229	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 8.	0.909
CNOT7	lrrc27	ENSSPAP00000025133	ENSSPAP00000028534	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.904
CNOT9	CNOT7	ENSSPAP00000021074	ENSSPAP00000025133	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex subunit 7.	0.973
CNOT9	ENSSPAP00000008883	ENSSPAP00000021074	ENSSPAP00000008883	CCR4-NOT transcription complex subunit 9.	Uncharacterized protein.	0.957
CNOT9	LOC103363318	ENSSPAP00000021074	ENSSPAP00000004538	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex subunit 9.	0.932
CNOT9	LOC103366045	ENSSPAP00000021074	ENSSPAP00000001851	CCR4-NOT transcription complex subunit 9.	CCR4-NOT transcription complex, subunit 3b.	0.981
CNOT9	LOC103366440	ENSSPAP00000021074	ENSSPAP00000018544	CCR4-NOT transcription complex subunit 9.	NOT2_3_5 domain-containing protein.	0.971