12 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRF	Serum response factor. (601 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
	nbeal1	Neurobeachin-like 1. (2696 aa)
	SRF-2	Serum response factor. (478 aa)
	LOC103371563	E1A binding protein p300 a. (2869 aa)
	LOC103365900	GATA binding protein 1a. (425 aa)
	ep300	E1A binding protein p300 b. (2872 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	nbeal2	Neurobeachin-like 2. (2800 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103357838	ptpn11	ENSSPAP00000012523	ENSSPAP00000015764	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.899
LOC103365900	LOC103371563	ENSSPAP00000028230	ENSSPAP00000030493	GATA binding protein 1a.	E1A binding protein p300 a.	0.848
LOC103365900	SRF	ENSSPAP00000028230	ENSSPAP00000008430	GATA binding protein 1a.	Serum response factor.	0.792
LOC103365900	SRF-2	ENSSPAP00000028230	ENSSPAP00000022505	GATA binding protein 1a.	Serum response factor.	0.792
LOC103365900	ep300	ENSSPAP00000028230	ENSSPAP00000023258	GATA binding protein 1a.	E1A binding protein p300 b.	0.848
LOC103371563	LOC103365900	ENSSPAP00000030493	ENSSPAP00000028230	E1A binding protein p300 a.	GATA binding protein 1a.	0.848
LOC103371563	ep300	ENSSPAP00000030493	ENSSPAP00000023258	E1A binding protein p300 a.	E1A binding protein p300 b.	0.899
SRF	LOC103365900	ENSSPAP00000008430	ENSSPAP00000028230	Serum response factor.	GATA binding protein 1a.	0.792
SRF	SRF-2	ENSSPAP00000008430	ENSSPAP00000022505	Serum response factor.	Serum response factor.	0.834
SRF-2	LOC103365900	ENSSPAP00000022505	ENSSPAP00000028230	Serum response factor.	GATA binding protein 1a.	0.792
SRF-2	SRF	ENSSPAP00000022505	ENSSPAP00000008430	Serum response factor.	Serum response factor.	0.834
ep300	LOC103365900	ENSSPAP00000023258	ENSSPAP00000028230	E1A binding protein p300 b.	GATA binding protein 1a.	0.848
ep300	LOC103371563	ENSSPAP00000023258	ENSSPAP00000030493	E1A binding protein p300 b.	E1A binding protein p300 a.	0.899
ptpn11	LOC103357838	ENSSPAP00000015764	ENSSPAP00000012523	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.899