(13 nodes) Adrenal gland development network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103372669	NR LBD domain-containing protein. (260 aa)
	NR0B1	Nuclear receptor subfamily 0 group B member 1. (258 aa)
	LOC103361952	Dickkopf WNT signaling pathway inhibitor 3a. (272 aa)
	ENSSPAP00000026515	Cytochrome P450, family 1, subfamily C, polypeptide 2; Belongs to the cytochrome P450 family. (523 aa)
	LOC103357016	Cytochrome P450, family 1, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family. (523 aa)
	LOC103369302	WT1 transcription factor a. (432 aa)
	nf1	Neurofibromin 1b. (2780 aa)
	armc5	Armadillo repeat containing 5. (1262 aa)
	dkk3	Dickkopf WNT signaling pathway inhibitor 3b. (265 aa)
	LOC103366994	Uncharacterized protein. (679 aa)
	LOC103356110	Cytochrome P450, family 1, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (537 aa)
	abcd1	ATP-binding cassette, sub-family D (ALD), member 1. (602 aa)
	wt1	WT1 transcription factor b. (426 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103369302	LOC103372669	ENSSPAP00000023395	ENSSPAP00000029816	WT1 transcription factor a.	NR LBD domain-containing protein.	0.456
LOC103369302	NR0B1	ENSSPAP00000023395	ENSSPAP00000027723	WT1 transcription factor a.	Nuclear receptor subfamily 0 group B member 1.	0.456
LOC103372669	LOC103369302	ENSSPAP00000029816	ENSSPAP00000023395	NR LBD domain-containing protein.	WT1 transcription factor a.	0.456
LOC103372669	wt1	ENSSPAP00000029816	ENSSPAP00000006664	NR LBD domain-containing protein.	WT1 transcription factor b.	0.456
NR0B1	LOC103369302	ENSSPAP00000027723	ENSSPAP00000023395	Nuclear receptor subfamily 0 group B member 1.	WT1 transcription factor a.	0.456
NR0B1	wt1	ENSSPAP00000027723	ENSSPAP00000006664	Nuclear receptor subfamily 0 group B member 1.	WT1 transcription factor b.	0.456
wt1	LOC103372669	ENSSPAP00000006664	ENSSPAP00000029816	WT1 transcription factor b.	NR LBD domain-containing protein.	0.456
wt1	NR0B1	ENSSPAP00000006664	ENSSPAP00000027723	WT1 transcription factor b.	Nuclear receptor subfamily 0 group B member 1.	0.456