35 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lamp2	Lysosomal-associated membrane protein 2. (438 aa)
	ENSSPAP00000025644	Uncharacterized protein. (68 aa)
	LOC103362575	Toll-like receptor 18. (922 aa)
	RAB9A	RAB9A, member RAS oncogene family. (206 aa)
	ENSSPAP00000010396	PIPK domain-containing protein. (259 aa)
	tlr1	Toll-like receptor 1. (801 aa)
	LOC103363555	TIR domain-containing protein; Belongs to the Toll-like receptor family. (827 aa)
	ocrl	OCRL inositol polyphosphate-5-phosphatase. (958 aa)
	ENSSPAP00000012938	RAB9B, member RAS oncogene family. (219 aa)
	LOC103364208	RAB32b, member RAS oncogene family. (219 aa)
	LOC103371514	Synaptotagmin VIIa. (479 aa)
	RAB38	RAB38, member RAS oncogene family. (212 aa)
	ENSSPAP00000010376	Uncharacterized protein. (140 aa)
	LOC103373033	TIR domain-containing protein. (817 aa)
	LOC103375967	RAB38c, member of RAS oncogene family. (222 aa)
	LOC103355770	Zgc:162171. (247 aa)
	ENSSPAP00000014896	Uncharacterized protein. (217 aa)
	vamp7	Synaptobrevin-like 1; Belongs to the synaptobrevin family. (219 aa)
	TLR2	Toll like receptor 2; Belongs to the Toll-like receptor family. (794 aa)
	inpp5b	Inositol polyphosphate-5-phosphatase B. (858 aa)
	pip4p2	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (256 aa)
	LOC103375488	Ig-like domain-containing protein; Belongs to the MHC class I family. (396 aa)
	LOC103375504	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (275 aa)
	rilp	Rab interacting lysosomal protein. (420 aa)
	LOC103371479	Si:ch73-234b20.5. (103 aa)
	rab22a	RAB22A, member RAS oncogene family. (194 aa)
	pip4p1	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (270 aa)
	LOC103366613	Uncharacterized protein. (207 aa)
	RAB31	RAB31, member RAS oncogene family. (194 aa)
	lamp1	Lysosomal associated membrane protein 1a. (415 aa)
	LOC103363410	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (247 aa)
	LOC103359881	RAB7a, member RAS oncogene family. (207 aa)
	ENSSPAP00000021245	Uncharacterized protein. (88 aa)
	ENSSPAP00000025630	Synaptotagmin VIIb. (547 aa)
	LOC103354488	RAB38b, member of RAS oncogene family. (218 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000010376	ENSSPAP00000010396	ENSSPAP00000010376	ENSSPAP00000010396	Uncharacterized protein.	PIPK domain-containing protein.	0.895
ENSSPAP00000010376	LOC103363410	ENSSPAP00000010376	ENSSPAP00000007954	Uncharacterized protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.758
ENSSPAP00000010376	LOC103375504	ENSSPAP00000010376	ENSSPAP00000020547	Uncharacterized protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.816
ENSSPAP00000010376	inpp5b	ENSSPAP00000010376	ENSSPAP00000016557	Uncharacterized protein.	Inositol polyphosphate-5-phosphatase B.	0.749
ENSSPAP00000010376	ocrl	ENSSPAP00000010376	ENSSPAP00000012783	Uncharacterized protein.	OCRL inositol polyphosphate-5-phosphatase.	0.749
ENSSPAP00000010376	pip4p1	ENSSPAP00000010376	ENSSPAP00000001586	Uncharacterized protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.821
ENSSPAP00000010376	pip4p2	ENSSPAP00000010376	ENSSPAP00000019584	Uncharacterized protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.758
ENSSPAP00000010396	ENSSPAP00000010376	ENSSPAP00000010396	ENSSPAP00000010376	PIPK domain-containing protein.	Uncharacterized protein.	0.895
ENSSPAP00000010396	LOC103363410	ENSSPAP00000010396	ENSSPAP00000007954	PIPK domain-containing protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.830
ENSSPAP00000010396	LOC103375504	ENSSPAP00000010396	ENSSPAP00000020547	PIPK domain-containing protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.829
ENSSPAP00000010396	inpp5b	ENSSPAP00000010396	ENSSPAP00000016557	PIPK domain-containing protein.	Inositol polyphosphate-5-phosphatase B.	0.749
ENSSPAP00000010396	ocrl	ENSSPAP00000010396	ENSSPAP00000012783	PIPK domain-containing protein.	OCRL inositol polyphosphate-5-phosphatase.	0.753
ENSSPAP00000010396	pip4p1	ENSSPAP00000010396	ENSSPAP00000001586	PIPK domain-containing protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.834
ENSSPAP00000010396	pip4p2	ENSSPAP00000010396	ENSSPAP00000019584	PIPK domain-containing protein.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.830
ENSSPAP00000012938	ENSSPAP00000014896	ENSSPAP00000012938	ENSSPAP00000014896	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.899
ENSSPAP00000012938	LOC103359881	ENSSPAP00000012938	ENSSPAP00000031133	RAB9B, member RAS oncogene family.	RAB7a, member RAS oncogene family.	0.506
ENSSPAP00000012938	LOC103366613	ENSSPAP00000012938	ENSSPAP00000001863	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.506
ENSSPAP00000012938	RAB31	ENSSPAP00000012938	ENSSPAP00000001977	RAB9B, member RAS oncogene family.	RAB31, member RAS oncogene family.	0.676
ENSSPAP00000012938	RAB9A	ENSSPAP00000012938	ENSSPAP00000010386	RAB9B, member RAS oncogene family.	RAB9A, member RAS oncogene family.	0.899
ENSSPAP00000012938	rab22a	ENSSPAP00000012938	ENSSPAP00000028330	RAB9B, member RAS oncogene family.	RAB22A, member RAS oncogene family.	0.677