15 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000004600	Achaete-scute family bHLH transcription factor 1a. (166 aa)
	LOC103370974	JunE proto-oncogene, AP-1 transcription factor subunit. (340 aa)
	tnr	Tenascin R (restrictin, janusin). (1093 aa)
	mycbp2	MYC binding protein 2. (4643 aa)
	LOC103373543	Neurogenin 1. (194 aa)
	LOC103366385	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (183 aa)
	LOC103353029	Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (194 aa)
	ENSSPAP00000019452	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (282 aa)
	gap43	Growth associated protein 43. (225 aa)
	LOC103374965	Zmp:0000000846. (2380 aa)
	mtr	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1277 aa)
	ENSSPAP00000025535	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (185 aa)
	LOC103364230	Chondroitin sulfate proteoglycan 5a. (518 aa)
	LOC103356464	Tenascin C. (1729 aa)
	ENSSPAP00000028883	Chondroitin sulfate proteoglycan 5b. (362 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000004600	LOC103373543	ENSSPAP00000004600	ENSSPAP00000012638	Achaete-scute family bHLH transcription factor 1a.	Neurogenin 1.	0.622
LOC103356464	LOC103374965	ENSSPAP00000027792	ENSSPAP00000023698	Tenascin C.	Zmp:0000000846.	0.800
LOC103356464	tnr	ENSSPAP00000027792	ENSSPAP00000012487	Tenascin C.	Tenascin R (restrictin, janusin).	0.832
LOC103373543	ENSSPAP00000004600	ENSSPAP00000012638	ENSSPAP00000004600	Neurogenin 1.	Achaete-scute family bHLH transcription factor 1a.	0.622
LOC103374965	LOC103356464	ENSSPAP00000023698	ENSSPAP00000027792	Zmp:0000000846.	Tenascin C.	0.800
LOC103374965	tnr	ENSSPAP00000023698	ENSSPAP00000012487	Zmp:0000000846.	Tenascin R (restrictin, janusin).	0.820
tnr	LOC103356464	ENSSPAP00000012487	ENSSPAP00000027792	Tenascin R (restrictin, janusin).	Tenascin C.	0.832
tnr	LOC103374965	ENSSPAP00000012487	ENSSPAP00000023698	Tenascin R (restrictin, janusin).	Zmp:0000000846.	0.820