15 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sh2d1a	SH2 domain containing 1A duplicate b. (156 aa)
	ENSSPAP00000000809	Uncharacterized protein. (267 aa)
	crtam	Ig-like domain-containing protein. (228 aa)
	tyrobp	Uncharacterized protein. (187 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1045 aa)
	p2rx7	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family. (578 aa)
	LOC103370062	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (356 aa)
	lamp1	Lysosomal associated membrane protein 1a. (415 aa)
	il12b	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (350 aa)
	LOC103375488	Ig-like domain-containing protein; Belongs to the MHC class I family. (396 aa)
	ENSSPAP00000020574	Uncharacterized protein. (176 aa)
	LOC103354822	Cell adhesion molecule 1a. (384 aa)
	LOC103356494	Cell adhesion molecule 1b. (387 aa)
	fadd	Uncharacterized protein. (191 aa)
	cd226	CD226 molecule. (354 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000000809	LOC103354822	ENSSPAP00000000809	ENSSPAP00000025970	Uncharacterized protein.	Cell adhesion molecule 1a.	0.441
ENSSPAP00000000809	LOC103356494	ENSSPAP00000000809	ENSSPAP00000028358	Uncharacterized protein.	Cell adhesion molecule 1b.	0.441
ENSSPAP00000000809	crtam	ENSSPAP00000000809	ENSSPAP00000000826	Uncharacterized protein.	Ig-like domain-containing protein.	0.757
LOC103354822	ENSSPAP00000000809	ENSSPAP00000025970	ENSSPAP00000000809	Cell adhesion molecule 1a.	Uncharacterized protein.	0.441
LOC103354822	LOC103356494	ENSSPAP00000025970	ENSSPAP00000028358	Cell adhesion molecule 1a.	Cell adhesion molecule 1b.	0.831
LOC103354822	crtam	ENSSPAP00000025970	ENSSPAP00000000826	Cell adhesion molecule 1a.	Ig-like domain-containing protein.	0.441
LOC103354822	tyrobp	ENSSPAP00000025970	ENSSPAP00000002095	Cell adhesion molecule 1a.	Uncharacterized protein.	0.493
LOC103356494	ENSSPAP00000000809	ENSSPAP00000028358	ENSSPAP00000000809	Cell adhesion molecule 1b.	Uncharacterized protein.	0.441
LOC103356494	LOC103354822	ENSSPAP00000028358	ENSSPAP00000025970	Cell adhesion molecule 1b.	Cell adhesion molecule 1a.	0.831
LOC103356494	crtam	ENSSPAP00000028358	ENSSPAP00000000826	Cell adhesion molecule 1b.	Ig-like domain-containing protein.	0.441
LOC103356494	tyrobp	ENSSPAP00000028358	ENSSPAP00000002095	Cell adhesion molecule 1b.	Uncharacterized protein.	0.493
LOC103370062	il12b	ENSSPAP00000005918	ENSSPAP00000011750	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.840
crtam	ENSSPAP00000000809	ENSSPAP00000000826	ENSSPAP00000000809	Ig-like domain-containing protein.	Uncharacterized protein.	0.757
crtam	LOC103354822	ENSSPAP00000000826	ENSSPAP00000025970	Ig-like domain-containing protein.	Cell adhesion molecule 1a.	0.441
crtam	LOC103356494	ENSSPAP00000000826	ENSSPAP00000028358	Ig-like domain-containing protein.	Cell adhesion molecule 1b.	0.441
fadd	ptprc	ENSSPAP00000028894	ENSSPAP00000004799	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.433
fadd	tyrobp	ENSSPAP00000028894	ENSSPAP00000002095	Uncharacterized protein.	Uncharacterized protein.	0.655
il12b	LOC103370062	ENSSPAP00000011750	ENSSPAP00000005918	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.840
ptprc	fadd	ENSSPAP00000004799	ENSSPAP00000028894	Protein tyrosine phosphatase receptor type C.	Uncharacterized protein.	0.433
ptprc	sh2d1a	ENSSPAP00000004799	ENSSPAP00000019035	Protein tyrosine phosphatase receptor type C.	SH2 domain containing 1A duplicate b.	0.531