17 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103363946	Si:dkey-16l2.16. (209 aa)
	ENSSPAP00000002516	Uncharacterized protein. (192 aa)
	rab30	RAB30, member RAS oncogene family. (203 aa)
	LOC103374601	RAB33B, member RAS oncogene family a. (240 aa)
	rab21	RAB21, member RAS oncogene family. (223 aa)
	ENSSPAP00000014896	Uncharacterized protein. (217 aa)
	rab12	RAB12, member RAS oncogene family. (243 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	TMEM19	Transmembrane protein 19. (335 aa)
	ENSSPAP00000012938	RAB9B, member RAS oncogene family. (219 aa)
	rab35	RAB35, member RAS oncogene family b. (201 aa)
	RAB9A	RAB9A, member RAS oncogene family. (206 aa)
	LOC103357227	Zgc:101559. (234 aa)
	rab33a	RAB33A, member RAS oncogene family. (281 aa)
	ppp1r21	Protein phosphatase 1, regulatory subunit 21. (785 aa)
	rab4b	RAB4B, member RAS oncogene family. (230 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000002516	rab21	ENSSPAP00000002516	ENSSPAP00000017221	Uncharacterized protein.	RAB21, member RAS oncogene family.	0.447
ENSSPAP00000002516	rab35	ENSSPAP00000002516	ENSSPAP00000011037	Uncharacterized protein.	RAB35, member RAS oncogene family b.	0.866
ENSSPAP00000002516	rab4a	ENSSPAP00000002516	ENSSPAP00000017925	Uncharacterized protein.	RAB4a, member RAS oncogene family.	0.470
ENSSPAP00000002516	rab4b	ENSSPAP00000002516	ENSSPAP00000021069	Uncharacterized protein.	RAB4B, member RAS oncogene family.	0.467
ENSSPAP00000012938	ENSSPAP00000014896	ENSSPAP00000012938	ENSSPAP00000014896	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.899
ENSSPAP00000012938	LOC103357227	ENSSPAP00000012938	ENSSPAP00000008405	RAB9B, member RAS oncogene family.	Zgc:101559.	0.628
ENSSPAP00000012938	LOC103374601	ENSSPAP00000012938	ENSSPAP00000006217	RAB9B, member RAS oncogene family.	RAB33B, member RAS oncogene family a.	0.623
ENSSPAP00000012938	RAB39B	ENSSPAP00000012938	ENSSPAP00000014256	RAB9B, member RAS oncogene family.	RAB39B, member RAS oncogene family.	0.492
ENSSPAP00000012938	RAB9A	ENSSPAP00000012938	ENSSPAP00000010386	RAB9B, member RAS oncogene family.	RAB9A, member RAS oncogene family.	0.899
ENSSPAP00000012938	rab12	ENSSPAP00000012938	ENSSPAP00000014329	RAB9B, member RAS oncogene family.	RAB12, member RAS oncogene family.	0.494
ENSSPAP00000012938	rab21	ENSSPAP00000012938	ENSSPAP00000017221	RAB9B, member RAS oncogene family.	RAB21, member RAS oncogene family.	0.427
ENSSPAP00000012938	rab33a	ENSSPAP00000012938	ENSSPAP00000007559	RAB9B, member RAS oncogene family.	RAB33A, member RAS oncogene family.	0.621
ENSSPAP00000012938	rab4a	ENSSPAP00000012938	ENSSPAP00000017925	RAB9B, member RAS oncogene family.	RAB4a, member RAS oncogene family.	0.523
ENSSPAP00000012938	rab4b	ENSSPAP00000012938	ENSSPAP00000021069	RAB9B, member RAS oncogene family.	RAB4B, member RAS oncogene family.	0.527
ENSSPAP00000014896	ENSSPAP00000012938	ENSSPAP00000014896	ENSSPAP00000012938	Uncharacterized protein.	RAB9B, member RAS oncogene family.	0.899
ENSSPAP00000014896	LOC103357227	ENSSPAP00000014896	ENSSPAP00000008405	Uncharacterized protein.	Zgc:101559.	0.625
ENSSPAP00000014896	LOC103374601	ENSSPAP00000014896	ENSSPAP00000006217	Uncharacterized protein.	RAB33B, member RAS oncogene family a.	0.620
ENSSPAP00000014896	RAB39B	ENSSPAP00000014896	ENSSPAP00000014256	Uncharacterized protein.	RAB39B, member RAS oncogene family.	0.491
ENSSPAP00000014896	RAB9A	ENSSPAP00000014896	ENSSPAP00000010386	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.899
ENSSPAP00000014896	rab12	ENSSPAP00000014896	ENSSPAP00000014329	Uncharacterized protein.	RAB12, member RAS oncogene family.	0.489