STRINGSTRING
ercc5 ercc5 ercc1 ercc1 ercc3 ercc3 ercc2 ercc2 bivm bivm NTHL1 NTHL1 ogg1 ogg1 ercc4 ercc4 xpa xpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ercc5Excision repair cross-complementation group 5. (1139 aa)
ercc1Excision repair cross-complementation group 1. (361 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
bivmBasic, immunoglobulin-like variable motif containing. (500 aa)
NTHL1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (306 aa)
ogg18-oxoguanine DNA glycosylase. (414 aa)
ercc4Excision repair cross-complementation group 4. (899 aa)
xpaXeroderma pigmentosum, complementation group A. (273 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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