(10 nodes) Plasma lipoprotein particle clearance network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000030443	Vitellogenin domain-containing protein. (2395 aa)
	apom	Uncharacterized protein. (190 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (513 aa)
	ldlrap1	Low density lipoprotein receptor adaptor protein 1b. (312 aa)
	LOC103371606	Apolipoprotein Ba. (4357 aa)
	ENSSPAP00000030547	Uncharacterized protein. (414 aa)
	cd36	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family. (454 aa)
	apoe	Apolipoprotein Eb. (303 aa)
	ENSSPAP00000030537	Vitellogenin domain-containing protein. (772 aa)
	ENSSPAP00000030517	Vitellogenin domain-containing protein. (2328 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000030443	ENSSPAP00000030547	ENSSPAP00000030443	ENSSPAP00000030547	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.464
ENSSPAP00000030443	apoe	ENSSPAP00000030443	ENSSPAP00000017611	Vitellogenin domain-containing protein.	Apolipoprotein Eb.	0.799
ENSSPAP00000030443	cd36	ENSSPAP00000030443	ENSSPAP00000017730	Vitellogenin domain-containing protein.	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.	0.778
ENSSPAP00000030443	ldlrap1	ENSSPAP00000030443	ENSSPAP00000008792	Vitellogenin domain-containing protein.	Low density lipoprotein receptor adaptor protein 1b.	0.689
ENSSPAP00000030443	scarb1	ENSSPAP00000030443	ENSSPAP00000003163	Vitellogenin domain-containing protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.776
ENSSPAP00000030517	apoe	ENSSPAP00000030517	ENSSPAP00000017611	Vitellogenin domain-containing protein.	Apolipoprotein Eb.	0.799
ENSSPAP00000030517	cd36	ENSSPAP00000030517	ENSSPAP00000017730	Vitellogenin domain-containing protein.	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.	0.778
ENSSPAP00000030517	ldlrap1	ENSSPAP00000030517	ENSSPAP00000008792	Vitellogenin domain-containing protein.	Low density lipoprotein receptor adaptor protein 1b.	0.689
ENSSPAP00000030517	scarb1	ENSSPAP00000030517	ENSSPAP00000003163	Vitellogenin domain-containing protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.776
ENSSPAP00000030537	ENSSPAP00000030547	ENSSPAP00000030537	ENSSPAP00000030547	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.837
ENSSPAP00000030537	apoe	ENSSPAP00000030537	ENSSPAP00000017611	Vitellogenin domain-containing protein.	Apolipoprotein Eb.	0.799
ENSSPAP00000030537	cd36	ENSSPAP00000030537	ENSSPAP00000017730	Vitellogenin domain-containing protein.	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.	0.778
ENSSPAP00000030537	ldlrap1	ENSSPAP00000030537	ENSSPAP00000008792	Vitellogenin domain-containing protein.	Low density lipoprotein receptor adaptor protein 1b.	0.689
ENSSPAP00000030537	scarb1	ENSSPAP00000030537	ENSSPAP00000003163	Vitellogenin domain-containing protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.776
ENSSPAP00000030547	ENSSPAP00000030443	ENSSPAP00000030547	ENSSPAP00000030443	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.464
ENSSPAP00000030547	ENSSPAP00000030537	ENSSPAP00000030547	ENSSPAP00000030537	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.837
ENSSPAP00000030547	apoe	ENSSPAP00000030547	ENSSPAP00000017611	Uncharacterized protein.	Apolipoprotein Eb.	0.799
ENSSPAP00000030547	cd36	ENSSPAP00000030547	ENSSPAP00000017730	Uncharacterized protein.	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.	0.778
ENSSPAP00000030547	ldlrap1	ENSSPAP00000030547	ENSSPAP00000008792	Uncharacterized protein.	Low density lipoprotein receptor adaptor protein 1b.	0.689
ENSSPAP00000030547	scarb1	ENSSPAP00000030547	ENSSPAP00000003163	Uncharacterized protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.776