(10 nodes) Vascular associated smooth muscle cell differentiation network (Stegastes partitus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sgcb	Sarcoglycan, beta (dystrophin-associated glycoprotein). (316 aa)
	LOC103362426	Endothelin receptor type Ab. (313 aa)
	nfatc4	Nuclear factor of activated T cells 4. (551 aa)
	ednra	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (451 aa)
	SRF	Serum response factor. (601 aa)
	ENSSPAP00000009155	Mesoderm posterior ba. (132 aa)
	LOC103367389	Uncharacterized protein. (219 aa)
	ramp2	Receptor (G protein-coupled) activity modifying protein 2. (168 aa)
	LOC103367103	RHD domain-containing protein. (643 aa)
	SRF-2	Serum response factor. (478 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103362426	ednra	ENSSPAP00000018883	ENSSPAP00000004293	Endothelin receptor type Ab.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.899
LOC103367103	SRF	ENSSPAP00000028209	ENSSPAP00000008430	RHD domain-containing protein.	Serum response factor.	0.765
LOC103367103	SRF-2	ENSSPAP00000028209	ENSSPAP00000022505	RHD domain-containing protein.	Serum response factor.	0.765
SRF	LOC103367103	ENSSPAP00000008430	ENSSPAP00000028209	Serum response factor.	RHD domain-containing protein.	0.765
SRF	SRF-2	ENSSPAP00000008430	ENSSPAP00000022505	Serum response factor.	Serum response factor.	0.834
SRF	nfatc4	ENSSPAP00000008430	ENSSPAP00000016518	Serum response factor.	Nuclear factor of activated T cells 4.	0.765
SRF-2	LOC103367103	ENSSPAP00000022505	ENSSPAP00000028209	Serum response factor.	RHD domain-containing protein.	0.765
SRF-2	SRF	ENSSPAP00000022505	ENSSPAP00000008430	Serum response factor.	Serum response factor.	0.834
SRF-2	nfatc4	ENSSPAP00000022505	ENSSPAP00000016518	Serum response factor.	Nuclear factor of activated T cells 4.	0.765
ednra	LOC103362426	ENSSPAP00000004293	ENSSPAP00000018883	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Ab.	0.899
nfatc4	SRF	ENSSPAP00000016518	ENSSPAP00000008430	Nuclear factor of activated T cells 4.	Serum response factor.	0.765
nfatc4	SRF-2	ENSSPAP00000016518	ENSSPAP00000022505	Nuclear factor of activated T cells 4.	Serum response factor.	0.765