(26 nodes) Skeletal muscle cell differentiation network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103353357	Ankyrin repeat domain 33ba. (533 aa)
	atf3	Activating transcription factor 3. (210 aa)
	gtf3c5	General transcription factor IIIC, polypeptide 5. (526 aa)
	LOC103360291	Kelch-like family member 40a. (610 aa)
	ENSSPAP00000030034	MYND-type domain-containing protein. (105 aa)
	LOC103372696	SET domain-containing protein. (358 aa)
	FOXN2	Forkhead box N2b. (410 aa)
	LOC103363718	MADS-box domain-containing protein. (588 aa)
	klf5	Progesterone immunomodulatory binding factor 1. (510 aa)
	LOC103355350	Kruppel-like factor 5 like. (443 aa)
	LOC103376093	Myogenic factor. (279 aa)
	LOC103356904	Ankyrin repeat domain 33Aa. (414 aa)
	LOC103369254	Myocyte enhancer factor 2d. (564 aa)
	LOC103367966	Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1. (707 aa)
	LOC103367965	Uncharacterized protein. (640 aa)
	LOC103367911	Ankyrin repeat domain 33Ab. (454 aa)
	klhl40	Kelch-like family member 40b. (614 aa)
	LOC103358572	Ankyrin repeat and SOCS box containing 2b. (496 aa)
	phox2b	Paired like homeobox 2Bb. (285 aa)
	myog	Myogenin. (317 aa)
	smyd1	SET and MYND domain containing 1b. (489 aa)
	myf5	Myogenic factor. (240 aa)
	LOC103357491	Kruppel-like factor 5b. (443 aa)
	LOC103357250	Myogenic factor. (296 aa)
	rb1	Retinoblastoma 1. (909 aa)
	LOC103360515	Ankyrin repeat domain 33Bb. (450 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000030034	LOC103372696	ENSSPAP00000030034	ENSSPAP00000030027	MYND-type domain-containing protein.	SET domain-containing protein.	0.748
ENSSPAP00000030034	smyd1	ENSSPAP00000030034	ENSSPAP00000012308	MYND-type domain-containing protein.	SET and MYND domain containing 1b.	0.661
LOC103355350	gtf3c5	ENSSPAP00000025012	ENSSPAP00000030518	Kruppel-like factor 5 like.	General transcription factor IIIC, polypeptide 5.	0.528
LOC103357250	LOC103363718	ENSSPAP00000009121	ENSSPAP00000025855	Myogenic factor.	MADS-box domain-containing protein.	0.638
LOC103357250	LOC103369254	ENSSPAP00000009121	ENSSPAP00000021277	Myogenic factor.	Myocyte enhancer factor 2d.	0.638
LOC103357250	myog	ENSSPAP00000009121	ENSSPAP00000012717	Myogenic factor.	Myogenin.	0.645
LOC103357491	gtf3c5	ENSSPAP00000009531	ENSSPAP00000030518	Kruppel-like factor 5b.	General transcription factor IIIC, polypeptide 5.	0.528
LOC103363718	LOC103357250	ENSSPAP00000025855	ENSSPAP00000009121	MADS-box domain-containing protein.	Myogenic factor.	0.638
LOC103363718	LOC103376093	ENSSPAP00000025855	ENSSPAP00000023661	MADS-box domain-containing protein.	Myogenic factor.	0.638
LOC103363718	myf5	ENSSPAP00000025855	ENSSPAP00000010673	MADS-box domain-containing protein.	Myogenic factor.	0.638
LOC103363718	myog	ENSSPAP00000025855	ENSSPAP00000012717	MADS-box domain-containing protein.	Myogenin.	0.822
LOC103369254	LOC103357250	ENSSPAP00000021277	ENSSPAP00000009121	Myocyte enhancer factor 2d.	Myogenic factor.	0.638
LOC103369254	LOC103376093	ENSSPAP00000021277	ENSSPAP00000023661	Myocyte enhancer factor 2d.	Myogenic factor.	0.638
LOC103369254	myf5	ENSSPAP00000021277	ENSSPAP00000010673	Myocyte enhancer factor 2d.	Myogenic factor.	0.638
LOC103369254	myog	ENSSPAP00000021277	ENSSPAP00000012717	Myocyte enhancer factor 2d.	Myogenin.	0.822
LOC103372696	ENSSPAP00000030034	ENSSPAP00000030027	ENSSPAP00000030034	SET domain-containing protein.	MYND-type domain-containing protein.	0.748
LOC103372696	smyd1	ENSSPAP00000030027	ENSSPAP00000012308	SET domain-containing protein.	SET and MYND domain containing 1b.	0.664
LOC103376093	LOC103363718	ENSSPAP00000023661	ENSSPAP00000025855	Myogenic factor.	MADS-box domain-containing protein.	0.638
LOC103376093	LOC103369254	ENSSPAP00000023661	ENSSPAP00000021277	Myogenic factor.	Myocyte enhancer factor 2d.	0.638
LOC103376093	myog	ENSSPAP00000023661	ENSSPAP00000012717	Myogenic factor.	Myogenin.	0.643