81 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103363273	Uncharacterized protein. (208 aa)
	vps51	VPS51 subunit of GARP complex. (834 aa)
	LOC103357602	Ring finger protein 126. (311 aa)
	RIC1	RIC1 homolog, RAB6A GEF complex partner 1. (1441 aa)
	LOC103371536	Dynactin 1b. (1000 aa)
	LOC103364794	Dynactin 1a. (1260 aa)
	LOC103369927	TBC1 domain family, member 10Ab. (469 aa)
	TMEM87B	Transmembrane protein 87B. (588 aa)
	vps53	VPS53 subunit of GARP complex. (831 aa)
	ENSSPAP00000025829	Uncharacterized protein. (143 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (943 aa)
	ENSSPAP00000025083	Vesicle transport through interaction with t-SNAREs 1A. (187 aa)
	ENSSPAP00000024763	BTB domain-containing protein. (203 aa)
	ENSSPAP00000024745	Uncharacterized protein. (117 aa)
	rnf126	RING-type domain-containing protein. (319 aa)
	rgp1	GP1 homolog, RAB6A GEF complex partner 1. (395 aa)
	vps29	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (208 aa)
	tbc1d23	TBC1 domain family, member 23. (696 aa)
	LOC103354239	RAB6B, member RAS oncogene family a. (208 aa)
	ENSSPAP00000022284	Sorting nexin 1b. (296 aa)
	gbf1	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1870 aa)
	LOC103353121	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1684 aa)
	clcf1	Cardiotrophin-like cytokine factor 1. (486 aa)
	tbc1d10c	TBC1 domain family, member 10C. (1296 aa)
	arl1	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	vps26b	VPS26, retromer complex component B. (333 aa)
	UBE2O	Ubiquitin conjugating enzyme E2 O. (1236 aa)
	arfrp1	ADP-ribosylation factor related protein 1. (184 aa)
	snx12	Sorting nexin 12. (182 aa)
	LOC103355838	CAP-ZIP_m domain-containing protein. (1467 aa)
	LOC103375420	Rab_bind domain-containing protein. (1521 aa)
	vps26a	VPS26, retromer complex component A. (328 aa)
	LOC103371972	Golgi transport 1Bb. (138 aa)
	snx3	Sorting nexin 3. (163 aa)
	trappc10	Trafficking protein particle complex 10. (1264 aa)
	vps35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (756 aa)
	stx6	Syntaxin 6; Belongs to the syntaxin family. (262 aa)
	tbc1d10a	TBC1 domain family, member 10Aa. (511 aa)
	LOC103357891	Uncharacterized protein. (334 aa)
	rbsn	Rabenosyn, RAB effector. (778 aa)
	ENSSPAP00000014896	Uncharacterized protein. (217 aa)
	snx5	Sorting nexin; Involved in several stages of intracellular trafficking. (400 aa)
	ENSSPAP00000014796	Golgi transport 1A. (121 aa)
	vti1b	Vesicle transport through interaction with t-SNAREs 1B. (229 aa)
	snx8	Sorting nexin 8a. (516 aa)
	ENSSPAP00000012938	RAB9B, member RAS oncogene family. (219 aa)
	VAMP3	Vesicle associated membrane protein 3. (104 aa)
	LOC103360106	RAB6B, member RAS oncogene family. (208 aa)
	BET1L	Bet1 golgi vesicular membrane trafficking protein like. (109 aa)
	GOLT1B	Golgi transport 1Ba. (138 aa)
	ENSSPAP00000010786	GRIP domain-containing protein. (424 aa)
	ENSSPAP00000010396	PIPK domain-containing protein. (259 aa)
	RAB9A	RAB9A, member RAS oncogene family. (206 aa)
	ENSSPAP00000010376	Uncharacterized protein. (140 aa)
	heatr5b	HEAT repeat containing 5B. (2047 aa)
	tbc1d10b	TBC1 domain family, member 10b. (928 aa)
	LOC103367340	Zgc:153733. (262 aa)
	vps52	VPS52 subunit of GARP complex. (724 aa)
	LOC103359525	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1686 aa)
	LOC103353460	Si:dkey-246g23.2. (244 aa)
	SLC66A2	Solute carrier family 66 member 2. (271 aa)
	stx10	Syntaxin 10. (242 aa)
	stx5	Syntaxin 5A; Belongs to the syntaxin family. (329 aa)
	cln5	CLN5 intracellular trafficking protein. (330 aa)
	cltc	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1685 aa)
	rab41	RAB41, member RAS oncogene family. (240 aa)
	heatr5a	HEAT repeat containing 5a. (2005 aa)
	LOC103374049	PH domain-containing protein. (274 aa)
	plekhj1	Pleckstrin homology domain containing, family J member 1. (158 aa)
	snx6	Sorting nexin; Involved in several stages of intracellular trafficking. (407 aa)
	tbc1d5	TBC1 domain family, member 5. (889 aa)
	washc1	WAS protein family homolog 1. (474 aa)
	TMEM87A	Transmembrane protein 87A. (550 aa)
	RAB29	RAB29, member RAS oncogene family. (206 aa)
	stx16	Syntaxin 16; Belongs to the syntaxin family. (312 aa)
	vps54	VPS54 subunit of GARP complex. (954 aa)
	LOC103376583	Si:dkey-28n18.9. (369 aa)
	SNX2	Sorting nexin 2. (299 aa)
	LOC103366729	Sorting nexin 1a. (821 aa)
	pheta1	Si:ch211-193c2.2. (278 aa)
	prepl	Prolyl endopeptidase like. (725 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1L	ENSSPAP00000024745	ENSSPAP00000012071	ENSSPAP00000024745	Bet1 golgi vesicular membrane trafficking protein like.	Uncharacterized protein.	0.459
BET1L	ENSSPAP00000024763	ENSSPAP00000012071	ENSSPAP00000024763	Bet1 golgi vesicular membrane trafficking protein like.	BTB domain-containing protein.	0.459
BET1L	ENSSPAP00000025083	ENSSPAP00000012071	ENSSPAP00000025083	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle transport through interaction with t-SNAREs 1A.	0.627
BET1L	VAMP3	ENSSPAP00000012071	ENSSPAP00000012496	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle associated membrane protein 3.	0.631
BET1L	ankfy1	ENSSPAP00000012071	ENSSPAP00000025318	Bet1 golgi vesicular membrane trafficking protein like.	Ankyrin repeat and FYVE domain containing 1.	0.499
BET1L	arl1	ENSSPAP00000012071	ENSSPAP00000019398	Bet1 golgi vesicular membrane trafficking protein like.	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.	0.476
BET1L	gbf1	ENSSPAP00000012071	ENSSPAP00000021349	Bet1 golgi vesicular membrane trafficking protein like.	Golgi brefeldin A resistant guanine nucleotide exchange factor 1.	0.706
BET1L	stx10	ENSSPAP00000012071	ENSSPAP00000009590	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 10.	0.534
BET1L	stx16	ENSSPAP00000012071	ENSSPAP00000002296	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 16; Belongs to the syntaxin family.	0.499
BET1L	stx5	ENSSPAP00000012071	ENSSPAP00000009226	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 5A; Belongs to the syntaxin family.	0.997
BET1L	stx6	ENSSPAP00000012071	ENSSPAP00000015891	Bet1 golgi vesicular membrane trafficking protein like.	Syntaxin 6; Belongs to the syntaxin family.	0.534
BET1L	vti1b	ENSSPAP00000012071	ENSSPAP00000014671	Bet1 golgi vesicular membrane trafficking protein like.	Vesicle transport through interaction with t-SNAREs 1B.	0.627
ENSSPAP00000010376	ENSSPAP00000010396	ENSSPAP00000010376	ENSSPAP00000010396	Uncharacterized protein.	PIPK domain-containing protein.	0.895
ENSSPAP00000010376	ENSSPAP00000010786	ENSSPAP00000010376	ENSSPAP00000010786	Uncharacterized protein.	GRIP domain-containing protein.	0.503
ENSSPAP00000010376	LOC103375420	ENSSPAP00000010376	ENSSPAP00000017825	Uncharacterized protein.	Rab_bind domain-containing protein.	0.503
ENSSPAP00000010376	rbsn	ENSSPAP00000010376	ENSSPAP00000015553	Uncharacterized protein.	Rabenosyn, RAB effector.	0.497
ENSSPAP00000010396	ENSSPAP00000010376	ENSSPAP00000010396	ENSSPAP00000010376	PIPK domain-containing protein.	Uncharacterized protein.	0.895
ENSSPAP00000010396	ENSSPAP00000010786	ENSSPAP00000010396	ENSSPAP00000010786	PIPK domain-containing protein.	GRIP domain-containing protein.	0.503
ENSSPAP00000010396	LOC103375420	ENSSPAP00000010396	ENSSPAP00000017825	PIPK domain-containing protein.	Rab_bind domain-containing protein.	0.503
ENSSPAP00000010396	rbsn	ENSSPAP00000010396	ENSSPAP00000015553	PIPK domain-containing protein.	Rabenosyn, RAB effector.	0.497