25 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103363223	DND microRNA-mediated repression inhibitor 1. (388 aa)
	ENSSPAP00000030976	3'-5' exonuclease domain-containing protein. (322 aa)
	mov10l1	Uncharacterized protein. (1069 aa)
	LOC103364796	Tudor domain containing 7 b. (1139 aa)
	piwil2	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (886 aa)
	ENSSPAP00000019064	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family. (398 aa)
	piwil1	Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family. (808 aa)
	LOC103359132	Uncharacterized protein. (779 aa)
	ENSSPAP00000017486	Tudor domain containing 6. (1664 aa)
	helz	Helicase with zinc finger. (2069 aa)
	tdrd9	Tudor domain containing 9. (1294 aa)
	henmt1	HEN methyltransferase 1. (401 aa)
	LOC103365065	Uncharacterized protein; Belongs to the DEAD box helicase family. (737 aa)
	asz1	Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (386 aa)
	tdrd1	Tudor domain containing 1. (1132 aa)
	ENSSPAP00000024905	Tudor domain-containing protein. (124 aa)
	tdrkh	Tudor and KH domain containing. (589 aa)
	tdrd7	Tudor domain containing 7 a. (1142 aa)
	ddx3x	DEAD-box helicase 3 X-linked a; Belongs to the DEAD box helicase family. (715 aa)
	ENSSPAP00000010909	Small nuclear ribonucleoprotein polypeptide G. (60 aa)
	ENSSPAP00000011693	Uncharacterized protein. (622 aa)
	LOC103356046	Mov10 RISC complex RNA helicase a. (999 aa)
	LOC103360971	Moloney leukemia virus 10b, tandem duplicate 1. (999 aa)
	ENSSPAP00000003645	Si:dkeyp-93d12.1. (1772 aa)
	tdrd5	Uncharacterized protein. (812 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000003645	ENSSPAP00000019064	ENSSPAP00000003645	ENSSPAP00000019064	Si:dkeyp-93d12.1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family.	0.514
ENSSPAP00000003645	ENSSPAP00000030976	ENSSPAP00000003645	ENSSPAP00000030976	Si:dkeyp-93d12.1.	3'-5' exonuclease domain-containing protein.	0.506
ENSSPAP00000003645	LOC103356046	ENSSPAP00000003645	ENSSPAP00000003148	Si:dkeyp-93d12.1.	Mov10 RISC complex RNA helicase a.	0.580
ENSSPAP00000003645	LOC103359132	ENSSPAP00000003645	ENSSPAP00000017838	Si:dkeyp-93d12.1.	Uncharacterized protein.	0.514
ENSSPAP00000003645	LOC103360971	ENSSPAP00000003645	ENSSPAP00000024292	Si:dkeyp-93d12.1.	Moloney leukemia virus 10b, tandem duplicate 1.	0.580
ENSSPAP00000003645	LOC103365065	ENSSPAP00000003645	ENSSPAP00000013493	Si:dkeyp-93d12.1.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.514
ENSSPAP00000003645	asz1	ENSSPAP00000003645	ENSSPAP00000011799	Si:dkeyp-93d12.1.	Ankyrin repeat, SAM and basic leucine zipper domain containing 1.	0.661
ENSSPAP00000003645	ddx3x	ENSSPAP00000003645	ENSSPAP00000024059	Si:dkeyp-93d12.1.	DEAD-box helicase 3 X-linked a; Belongs to the DEAD box helicase family.	0.514
ENSSPAP00000003645	helz	ENSSPAP00000003645	ENSSPAP00000017065	Si:dkeyp-93d12.1.	Helicase with zinc finger.	0.518
ENSSPAP00000003645	henmt1	ENSSPAP00000003645	ENSSPAP00000014371	Si:dkeyp-93d12.1.	HEN methyltransferase 1.	0.497
ENSSPAP00000003645	mov10l1	ENSSPAP00000003645	ENSSPAP00000029264	Si:dkeyp-93d12.1.	Uncharacterized protein.	0.580
ENSSPAP00000003645	piwil1	ENSSPAP00000003645	ENSSPAP00000017856	Si:dkeyp-93d12.1.	Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.	0.909
ENSSPAP00000003645	piwil2	ENSSPAP00000003645	ENSSPAP00000026443	Si:dkeyp-93d12.1.	Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.922
ENSSPAP00000003645	tdrd9	ENSSPAP00000003645	ENSSPAP00000016706	Si:dkeyp-93d12.1.	Tudor domain containing 9.	0.691
ENSSPAP00000003645	tdrkh	ENSSPAP00000003645	ENSSPAP00000008442	Si:dkeyp-93d12.1.	Tudor and KH domain containing.	0.660
ENSSPAP00000010909	ENSSPAP00000019064	ENSSPAP00000010909	ENSSPAP00000019064	Small nuclear ribonucleoprotein polypeptide G.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family.	0.623
ENSSPAP00000010909	LOC103359132	ENSSPAP00000010909	ENSSPAP00000017838	Small nuclear ribonucleoprotein polypeptide G.	Uncharacterized protein.	0.623
ENSSPAP00000010909	LOC103365065	ENSSPAP00000010909	ENSSPAP00000013493	Small nuclear ribonucleoprotein polypeptide G.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.623
ENSSPAP00000010909	ddx3x	ENSSPAP00000010909	ENSSPAP00000024059	Small nuclear ribonucleoprotein polypeptide G.	DEAD-box helicase 3 X-linked a; Belongs to the DEAD box helicase family.	0.623
ENSSPAP00000010909	tdrd9	ENSSPAP00000010909	ENSSPAP00000016706	Small nuclear ribonucleoprotein polypeptide G.	Tudor domain containing 9.	0.726