(86 nodes) Dendritic spine network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103372824	Protein phosphatase 1 regulatory subunit 9A-like B. (1244 aa)
	gpm6a	Uncharacterized protein. (241 aa)
	ENSSPAP00000030420	BTB domain-containing protein. (99 aa)
	eef2k	Eukaryotic elongation factor 2 kinase. (749 aa)
	LOC103374443	BAI1 associated protein 2. (522 aa)
	LOC103357082	Homer scaffold protein 1b. (361 aa)
	gria4	Glutamate receptor, ionotropic, AMPA 4a. (774 aa)
	LOC103361972	Uncharacterized protein. (1009 aa)
	abhd17b	Abhydrolase domain containing 17B. (288 aa)
	ENSSPAP00000026225	Dystrobrevin binding protein 1b. (237 aa)
	ENSSPAP00000026008	PDZ domain-containing protein. (225 aa)
	apba2	Amyloid beta (A4) precursor protein-binding, family A, member 2b. (791 aa)
	dagla	Diacylglycerol lipase, alpha. (1084 aa)
	LOC103369875	Uncharacterized protein. (913 aa)
	nr1d1	Nuclear receptor subfamily 1, group d, member 1. (514 aa)
	ENSSPAP00000025071	Uncharacterized protein. (208 aa)
	ENSSPAP00000022993	Uncharacterized protein. (503 aa)
	LOC103368695	Shisa family member 9b. (377 aa)
	TANC2	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (2086 aa)
	gper1	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family. (354 aa)
	CDC42	Cell division cycle 42. (191 aa)
	ENSSPAP00000022184	Potassium voltage-gated channel, Shal-related subfamily, member 1; Belongs to the potassium channel family. (604 aa)
	ENSSPAP00000022145	FERM_f0 domain-containing protein. (131 aa)
	ENSSPAP00000021756	Shisa family member 7a. (367 aa)
	LOC103372064	Cell division cycle 42. (191 aa)
	p2rx3	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family. (373 aa)
	ppp1r9b	Protein phosphatase 1, regulatory subunit 9Bb. (794 aa)
	KCND3	Potassium voltage-gated channel subfamily D member 3; Belongs to the potassium channel family. (652 aa)
	ENSSPAP00000019872	Shisa family member 9a. (318 aa)
	ptk2b	Protein tyrosine kinase 2 beta, b; Belongs to the protein kinase superfamily. Tyr protein kinase family. (974 aa)
	LOC103358559	Nerve growth factor receptor b. (423 aa)
	ENSSPAP00000018923	Rho-GAP domain-containing protein. (157 aa)
	LOC103373144	Uncharacterized protein. (736 aa)
	LOC103356837	Uncharacterized protein. (191 aa)
	palmd	Uncharacterized protein. (483 aa)
	ENSSPAP00000017677	Nerve growth factor receptor a (TNFR superfamily, member 16). (289 aa)
	LOC103361811	Uncharacterized protein. (391 aa)
	abhd17c	Abhydrolase domain containing 17C. (294 aa)
	pdlim4	PDZ and LIM domain 4. (376 aa)
	palm	Paralemmin 1a. (406 aa)
	APBA1	Amyloid beta precursor protein binding family A member 1. (844 aa)
	LOC103371944	PDZ domain-containing protein. (884 aa)
	LOC103373068	Uncharacterized protein. (1718 aa)
	srgap2	SLIT-ROBO Rho GTPase activating protein 2. (746 aa)
	fxr1	Fragile X mental retardation, autosomal homolog 1. (693 aa)
	LOC103361233	BAI1-associated protein 2a. (555 aa)
	LOC103356766	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (942 aa)
	gria1	Glutamate receptor, ionotropic, AMPA 1a. (920 aa)
	ENSSPAP00000012700	Uncharacterized protein. (259 aa)
	myl7	Myosin, light chain 7, regulatory. (173 aa)
	cttnbp2	Cortactin binding protein 2. (1432 aa)
	SYNDIG1	Synapse differentiation inducing 1. (243 aa)
	USP50	Ubiquitin specific peptidase 50; Belongs to the peptidase C19 family. (376 aa)
	usp8	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1091 aa)
	LOC103355681	Cytoplasmic polyadenylation element binding protein 4a. (746 aa)
	fxr2	Fragile X mental retardation, autosomal homolog 2. (674 aa)
	bcr	Si:dkey-91m11.5. (1291 aa)
	shank1	SH3 and multiple ankyrin repeat domains 1. (840 aa)
	ENSSPAP00000009303	Purinergic receptor P2X, ligand-gated ion channel, 3b. (345 aa)
	LOC103355066	Protein phosphatase 1 regulatory subunit 9A-like A. (1460 aa)
	atp6ap2	ATPase H+ transporting accessory protein 2. (362 aa)
	LOC103355621	Glycoprotein M6Aa. (278 aa)
	LOC103365010	BCR activator of RhoGEF and GTPase. (1386 aa)
	als2	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1565 aa)
	fmr1	Fragile X mental retardation 1. (612 aa)
	LOC103353409	Amyloid beta (A4) precursor protein-binding, family A, member 1b. (817 aa)
	LOC103374618	Uncharacterized protein. (580 aa)
	LOC103357241	Uncharacterized protein. (885 aa)
	LOC103369457	SH3 domain-containing protein. (192 aa)
	LOC103358316	BTB domain-containing protein; Belongs to the potassium channel family. (619 aa)
	LOC103367234	Glutamate receptor, ionotropic, AMPA 3a. (887 aa)
	lzts1	Leucine zipper, putative tumor suppressor 1. (601 aa)
	NRGN	Neurogranin. (90 aa)
	ppp1r9a	Protein phosphatase 1, regulatory subunit 9A. (1145 aa)
	apba3	Amyloid beta precursor protein binding family A member 3. (726 aa)
	LOC103364376	Peptidase_S9 domain-containing protein. (363 aa)
	dock10	Dedicator of cytokinesis 10; Belongs to the DOCK family. (2121 aa)
	ENSSPAP00000003617	Uncharacterized protein. (200 aa)
	LOC103368896	Protein tyrosine kinase 2. (916 aa)
	ENSSPAP00000003415	Focal_AT domain-containing protein. (115 aa)
	LOC103363285	Uncharacterized protein. (905 aa)
	ENSSPAP00000001940	Proline-rich transmembrane protein 2. (178 aa)
	LOC103365438	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1105 aa)
	ENSSPAP00000001789	BTB_2 domain-containing protein. (115 aa)
	abhd17a	Abhydrolase domain containing 17A. (321 aa)
	LOC103376574	Nuclear receptor subfamily 1, group D, member 4b. (571 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSSPAP00000003415	ENSSPAP00000022477	ENSSPAP00000003415	Cell division cycle 42.	Focal_AT domain-containing protein.	0.580
CDC42	ENSSPAP00000017677	ENSSPAP00000022477	ENSSPAP00000017677	Cell division cycle 42.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.821
CDC42	ENSSPAP00000018923	ENSSPAP00000022477	ENSSPAP00000018923	Cell division cycle 42.	Rho-GAP domain-containing protein.	0.605
CDC42	ENSSPAP00000022145	ENSSPAP00000022477	ENSSPAP00000022145	Cell division cycle 42.	FERM_f0 domain-containing protein.	0.807
CDC42	ENSSPAP00000026008	ENSSPAP00000022477	ENSSPAP00000026008	Cell division cycle 42.	PDZ domain-containing protein.	0.615
CDC42	LOC103356766	ENSSPAP00000022477	ENSSPAP00000013484	Cell division cycle 42.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.580
CDC42	LOC103356837	ENSSPAP00000022477	ENSSPAP00000018484	Cell division cycle 42.	Uncharacterized protein.	0.817
CDC42	LOC103361233	ENSSPAP00000022477	ENSSPAP00000013544	Cell division cycle 42.	BAI1-associated protein 2a.	0.933
CDC42	LOC103365010	ENSSPAP00000022477	ENSSPAP00000008022	Cell division cycle 42.	BCR activator of RhoGEF and GTPase.	0.605
CDC42	LOC103365438	ENSSPAP00000022477	ENSSPAP00000001829	Cell division cycle 42.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.580
CDC42	LOC103368896	ENSSPAP00000022477	ENSSPAP00000003535	Cell division cycle 42.	Protein tyrosine kinase 2.	0.580
CDC42	LOC103369457	ENSSPAP00000022477	ENSSPAP00000006791	Cell division cycle 42.	SH3 domain-containing protein.	0.686
CDC42	LOC103373068	ENSSPAP00000022477	ENSSPAP00000015720	Cell division cycle 42.	Uncharacterized protein.	0.789
CDC42	LOC103373144	ENSSPAP00000022477	ENSSPAP00000018496	Cell division cycle 42.	Uncharacterized protein.	0.605
CDC42	LOC103374443	ENSSPAP00000022477	ENSSPAP00000029123	Cell division cycle 42.	BAI1 associated protein 2.	0.933
CDC42	als2	ENSSPAP00000022477	ENSSPAP00000007847	Cell division cycle 42.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.637
CDC42	bcr	ENSSPAP00000022477	ENSSPAP00000010175	Cell division cycle 42.	Si:dkey-91m11.5.	0.605
CDC42	dock10	ENSSPAP00000022477	ENSSPAP00000003736	Cell division cycle 42.	Dedicator of cytokinesis 10; Belongs to the DOCK family.	0.960
CDC42	myl7	ENSSPAP00000022477	ENSSPAP00000012216	Cell division cycle 42.	Myosin, light chain 7, regulatory.	0.537
CDC42	pdlim4	ENSSPAP00000022477	ENSSPAP00000016619	Cell division cycle 42.	PDZ and LIM domain 4.	0.521