(14 nodes) Lysosomal lumen network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103375790	Scavenger receptor class B, member 2a; Belongs to the CD36 family. (530 aa)
	LOC103361141	Uncharacterized protein. (211 aa)
	nsg2	Neuronal vesicle trafficking associated 2. (180 aa)
	LOC103373564	Ribonuclease T2, like; Belongs to the RNase T2 family. (273 aa)
	epdr1	Ependymin related 1. (204 aa)
	NSG1	Neuronal vesicle trafficking associated 1. (185 aa)
	LOC103354167	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family. (263 aa)
	ENSSPAP00000023687	Uncharacterized protein. (272 aa)
	ENSSPAP00000023775	Uncharacterized protein. (350 aa)
	LOC103368766	Ribonuclease T2; Belongs to the RNase T2 family. (246 aa)
	LOC103373857	Uncharacterized protein. (1704 aa)
	pdgfrb	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1051 aa)
	LOC103363306	Scavenger receptor class B, member 2c; Belongs to the CD36 family. (481 aa)
	neu1	Neuraminidase 1. (385 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000023687	ENSSPAP00000023775	ENSSPAP00000023687	ENSSPAP00000023775	Uncharacterized protein.	Uncharacterized protein.	0.916
ENSSPAP00000023775	ENSSPAP00000023687	ENSSPAP00000023775	ENSSPAP00000023687	Uncharacterized protein.	Uncharacterized protein.	0.916
ENSSPAP00000023775	LOC103373857	ENSSPAP00000023775	ENSSPAP00000026633	Uncharacterized protein.	Uncharacterized protein.	0.562
LOC103354167	LOC103368766	ENSSPAP00000019491	ENSSPAP00000025899	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	Ribonuclease T2; Belongs to the RNase T2 family.	0.449
LOC103354167	LOC103373564	ENSSPAP00000019491	ENSSPAP00000013739	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	Ribonuclease T2, like; Belongs to the RNase T2 family.	0.449
LOC103363306	LOC103375790	ENSSPAP00000004071	ENSSPAP00000009756	Scavenger receptor class B, member 2c; Belongs to the CD36 family.	Scavenger receptor class B, member 2a; Belongs to the CD36 family.	0.900
LOC103368766	LOC103354167	ENSSPAP00000025899	ENSSPAP00000019491	Ribonuclease T2; Belongs to the RNase T2 family.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.449
LOC103373564	LOC103354167	ENSSPAP00000013739	ENSSPAP00000019491	Ribonuclease T2, like; Belongs to the RNase T2 family.	Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.	0.449
LOC103373857	ENSSPAP00000023775	ENSSPAP00000026633	ENSSPAP00000023775	Uncharacterized protein.	Uncharacterized protein.	0.562
LOC103375790	LOC103363306	ENSSPAP00000009756	ENSSPAP00000004071	Scavenger receptor class B, member 2a; Belongs to the CD36 family.	Scavenger receptor class B, member 2c; Belongs to the CD36 family.	0.900