(12 nodes) Alpha-catenin binding network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (783 aa)
	vcl	Vinculin b. (1066 aa)
	LOC103370833	Cadherin 26, tandem duplicate 1; Cadherins are calcium-dependent cell adhesion proteins. (832 aa)
	LOC103370831	Uncharacterized protein. (949 aa)
	LOC103362533	Junction plakoglobin a. (729 aa)
	PKP3	Plakophilin 3a. (830 aa)
	LOC103364881	NUMB like endocytic adaptor protein. (810 aa)
	numb	NUMB endocytic adaptor protein. (672 aa)
	LOC103369010	Vinculin a. (1126 aa)
	ajuba	Ajuba LIM protein. (730 aa)
	LOC103359554	Uncharacterized protein. (750 aa)
	LOC103371495	Uncharacterized protein. (768 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103359554	LOC103369010	ENSSPAP00000013044	ENSSPAP00000009037	Uncharacterized protein.	Vinculin a.	0.794
LOC103359554	LOC103370831	ENSSPAP00000013044	ENSSPAP00000024998	Uncharacterized protein.	Uncharacterized protein.	0.496
LOC103359554	LOC103370833	ENSSPAP00000013044	ENSSPAP00000025052	Uncharacterized protein.	Cadherin 26, tandem duplicate 1; Cadherins are calcium-dependent cell adhesion proteins.	0.496
LOC103359554	PKP3	ENSSPAP00000013044	ENSSPAP00000030433	Uncharacterized protein.	Plakophilin 3a.	0.781
LOC103359554	ctnnb1	ENSSPAP00000013044	ENSSPAP00000015579	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.953
LOC103359554	vcl	ENSSPAP00000013044	ENSSPAP00000025648	Uncharacterized protein.	Vinculin b.	0.794
LOC103362533	LOC103369010	ENSSPAP00000024322	ENSSPAP00000009037	Junction plakoglobin a.	Vinculin a.	0.794
LOC103362533	LOC103370831	ENSSPAP00000024322	ENSSPAP00000024998	Junction plakoglobin a.	Uncharacterized protein.	0.496
LOC103362533	LOC103370833	ENSSPAP00000024322	ENSSPAP00000025052	Junction plakoglobin a.	Cadherin 26, tandem duplicate 1; Cadherins are calcium-dependent cell adhesion proteins.	0.496
LOC103362533	PKP3	ENSSPAP00000024322	ENSSPAP00000030433	Junction plakoglobin a.	Plakophilin 3a.	0.781
LOC103362533	ctnnb1	ENSSPAP00000024322	ENSSPAP00000015579	Junction plakoglobin a.	Catenin (cadherin-associated protein), beta 1.	0.953
LOC103362533	vcl	ENSSPAP00000024322	ENSSPAP00000025648	Junction plakoglobin a.	Vinculin b.	0.794
LOC103364881	numb	ENSSPAP00000001079	ENSSPAP00000003212	NUMB like endocytic adaptor protein.	NUMB endocytic adaptor protein.	0.836
LOC103369010	LOC103359554	ENSSPAP00000009037	ENSSPAP00000013044	Vinculin a.	Uncharacterized protein.	0.794
LOC103369010	LOC103362533	ENSSPAP00000009037	ENSSPAP00000024322	Vinculin a.	Junction plakoglobin a.	0.794
LOC103369010	LOC103370831	ENSSPAP00000009037	ENSSPAP00000024998	Vinculin a.	Uncharacterized protein.	0.495
LOC103369010	LOC103370833	ENSSPAP00000009037	ENSSPAP00000025052	Vinculin a.	Cadherin 26, tandem duplicate 1; Cadherins are calcium-dependent cell adhesion proteins.	0.495
LOC103369010	LOC103371495	ENSSPAP00000009037	ENSSPAP00000028776	Vinculin a.	Uncharacterized protein.	0.777
LOC103369010	PKP3	ENSSPAP00000009037	ENSSPAP00000030433	Vinculin a.	Plakophilin 3a.	0.580
LOC103369010	ctnnb1	ENSSPAP00000009037	ENSSPAP00000015579	Vinculin a.	Catenin (cadherin-associated protein), beta 1.	0.859