(39 nodes) Photoreceptor cell maintenance network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ift172	Intraflagellar transport 172. (1728 aa)
	dctn2	Dynactin 2 (p50). (404 aa)
	LOC103364319	Excision repair cross-complementation group 6. (1449 aa)
	emc3	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (261 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (810 aa)
	cln8	CLN8 transmembrane ER and ERGIC protein. (289 aa)
	bsg	Basigin. (273 aa)
	crocc2	Ciliary rootlet coiled-coil, rootletin family member 2. (1744 aa)
	rp2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (372 aa)
	ENSSPAP00000021840	RP1 axonemal microtubule associated. (214 aa)
	LOC103368683	Usher syndrome 2A (autosomal recessive, mild). (3446 aa)
	spata7	Spermatogenesis associated 7. (594 aa)
	LOC103367984	Lebercilin LCA5. (632 aa)
	ENSSPAP00000017171	Uncharacterized protein. (2181 aa)
	crocc	Uncharacterized protein. (1934 aa)
	cep290	Centrosomal protein 290. (2306 aa)
	bbs10	Uncharacterized protein; Belongs to the TCP-1 chaperonin family. (655 aa)
	bbs12	Bardet-Biedl syndrome 12. (642 aa)
	bbs1	Bardet-Biedl syndrome 1. (592 aa)
	ift57	Intraflagellar transport 57 homolog (Chlamydomonas). (415 aa)
	mkks	McKusick-Kaufman syndrome. (567 aa)
	ENSSPAP00000010197	Uncharacterized protein. (198 aa)
	ENSSPAP00000010134	Uncharacterized protein. (262 aa)
	LOC103362235	Nucleoredoxin like 1. (229 aa)
	ENSSPAP00000000771	TPR_REGION domain-containing protein. (131 aa)
	LOC103353841	Crumbs cell polarity complex component 2b. (1428 aa)
	ENSSPAP00000000962	Uncharacterized protein. (433 aa)
	LOC103372774	Nuclear respiratory factor 1. (503 aa)
	LOC103372775	Crumbs cell polarity complex component 2a. (1370 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (415 aa)
	ENSSPAP00000003841	Uncharacterized protein. (677 aa)
	LOC103363869	Uncharacterized protein. (2566 aa)
	cluap1	Clusterin associated protein 1. (435 aa)
	nxnl2	Nucleoredoxin like 2. (156 aa)
	ENSSPAP00000006528	Uncharacterized protein. (473 aa)
	ENSSPAP00000006556	Uncharacterized protein. (180 aa)
	ush1c	Usher syndrome 1C. (503 aa)
	CRB1	Crumbs cell polarity complex component 1. (1366 aa)
	ENSSPAP00000007934	HintC domain-containing protein. (246 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000000771	ENSSPAP00000021840	ENSSPAP00000000771	ENSSPAP00000021840	TPR_REGION domain-containing protein.	RP1 axonemal microtubule associated.	0.532
ENSSPAP00000000771	LOC103363869	ENSSPAP00000000771	ENSSPAP00000005496	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.532
ENSSPAP00000000771	bbs1	ENSSPAP00000000771	ENSSPAP00000011820	TPR_REGION domain-containing protein.	Bardet-Biedl syndrome 1.	0.996
ENSSPAP00000000771	bbs10	ENSSPAP00000000771	ENSSPAP00000015584	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the TCP-1 chaperonin family.	0.660
ENSSPAP00000000771	bbs12	ENSSPAP00000000771	ENSSPAP00000015052	TPR_REGION domain-containing protein.	Bardet-Biedl syndrome 12.	0.696
ENSSPAP00000000771	cep290	ENSSPAP00000000771	ENSSPAP00000015844	TPR_REGION domain-containing protein.	Centrosomal protein 290.	0.674
ENSSPAP00000000771	cluap1	ENSSPAP00000000771	ENSSPAP00000005553	TPR_REGION domain-containing protein.	Clusterin associated protein 1.	0.696
ENSSPAP00000000771	crocc	ENSSPAP00000000771	ENSSPAP00000016935	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.602
ENSSPAP00000000771	crocc2	ENSSPAP00000000771	ENSSPAP00000023400	TPR_REGION domain-containing protein.	Ciliary rootlet coiled-coil, rootletin family member 2.	0.602
ENSSPAP00000000771	ift172	ENSSPAP00000000771	ENSSPAP00000004373	TPR_REGION domain-containing protein.	Intraflagellar transport 172.	0.723
ENSSPAP00000000771	ift57	ENSSPAP00000000771	ENSSPAP00000011712	TPR_REGION domain-containing protein.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.797
ENSSPAP00000000771	mkks	ENSSPAP00000000771	ENSSPAP00000010650	TPR_REGION domain-containing protein.	McKusick-Kaufman syndrome.	0.402
ENSSPAP00000000771	ush1c	ENSSPAP00000000771	ENSSPAP00000008625	TPR_REGION domain-containing protein.	Usher syndrome 1C.	0.440
ENSSPAP00000000962	ENSSPAP00000006528	ENSSPAP00000000962	ENSSPAP00000006528	Uncharacterized protein.	Uncharacterized protein.	0.585
ENSSPAP00000000962	ENSSPAP00000006556	ENSSPAP00000000962	ENSSPAP00000006556	Uncharacterized protein.	Uncharacterized protein.	0.585
ENSSPAP00000000962	LOC103367984	ENSSPAP00000000962	ENSSPAP00000019187	Uncharacterized protein.	Lebercilin LCA5.	0.418
ENSSPAP00000000962	LOC103368683	ENSSPAP00000000962	ENSSPAP00000021799	Uncharacterized protein.	Usher syndrome 2A (autosomal recessive, mild).	0.409
ENSSPAP00000000962	bbs12	ENSSPAP00000000962	ENSSPAP00000015052	Uncharacterized protein.	Bardet-Biedl syndrome 12.	0.420
ENSSPAP00000000962	cep290	ENSSPAP00000000962	ENSSPAP00000015844	Uncharacterized protein.	Centrosomal protein 290.	0.948
ENSSPAP00000000962	ift172	ENSSPAP00000000962	ENSSPAP00000004373	Uncharacterized protein.	Intraflagellar transport 172.	0.418