14 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000029527	Fibrinogen C-terminal domain-containing protein. (192 aa)
	LOC103366616	Si:ch211-157b11.8. (317 aa)
	tbx21	T-box transcription factor 21. (620 aa)
	rc3h2	Ring finger and CCCH-type domains 2. (1156 aa)
	tmem131l	Transmembrane 131 like. (1534 aa)
	zc3h12a	Zinc finger CCCH-type containing 12A. (621 aa)
	irf1	Interferon regulatory factor. (292 aa)
	fgl2	Fibrinogen-like 2a. (607 aa)
	rc3h1	Ring finger and CCCH-type domains 1b. (1136 aa)
	socs1	Suppressor of cytokine signaling 1a. (204 aa)
	hlx	H2.0-like homeo box 1 (Drosophila). (381 aa)
	LOC103369909	Si:ch211-203k16.3. (341 aa)
	LOC103374411	Si:dkey-206d17.12. (601 aa)
	cbfb	Core-binding factor subunit beta. (188 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103374411	rc3h1	ENSSPAP00000027802	ENSSPAP00000019132	Si:dkey-206d17.12.	Ring finger and CCCH-type domains 1b.	0.416
hlx	tbx21	ENSSPAP00000022001	ENSSPAP00000002899	H2.0-like homeo box 1 (Drosophila).	T-box transcription factor 21.	0.562
irf1	socs1	ENSSPAP00000016866	ENSSPAP00000020567	Interferon regulatory factor.	Suppressor of cytokine signaling 1a.	0.676
rc3h1	LOC103374411	ENSSPAP00000019132	ENSSPAP00000027802	Ring finger and CCCH-type domains 1b.	Si:dkey-206d17.12.	0.416
rc3h1	rc3h2	ENSSPAP00000019132	ENSSPAP00000006793	Ring finger and CCCH-type domains 1b.	Ring finger and CCCH-type domains 2.	0.849
rc3h1	zc3h12a	ENSSPAP00000019132	ENSSPAP00000016517	Ring finger and CCCH-type domains 1b.	Zinc finger CCCH-type containing 12A.	0.416
rc3h2	rc3h1	ENSSPAP00000006793	ENSSPAP00000019132	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1b.	0.849
socs1	irf1	ENSSPAP00000020567	ENSSPAP00000016866	Suppressor of cytokine signaling 1a.	Interferon regulatory factor.	0.676
tbx21	hlx	ENSSPAP00000002899	ENSSPAP00000022001	T-box transcription factor 21.	H2.0-like homeo box 1 (Drosophila).	0.562
zc3h12a	rc3h1	ENSSPAP00000016517	ENSSPAP00000019132	Zinc finger CCCH-type containing 12A.	Ring finger and CCCH-type domains 1b.	0.416