37 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	spry4	Sprouty homolog 4 (Drosophila). (379 aa)
	RASAL1	RAS protein activator like 1. (790 aa)
	ccdc125	Coiled-coil domain containing 125. (553 aa)
	spry1	Sprouty homolog 1, antagonist of FGF signaling (Drosophila). (360 aa)
	RASA2	RAS p21 protein activator 2. (825 aa)
	rasal3	RAS protein activator like 3. (1159 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (766 aa)
	arhgap24	Rho GTPase activating protein 24. (794 aa)
	rasa3	RAS p21 protein activator 3. (846 aa)
	flcn	Folliculin. (559 aa)
	lztr1	Leucine-zipper-like transcription regulator 1. (780 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	rasa1	RAS p21 protein activator (GTPase activating protein) 1a. (1045 aa)
	ripor1	RHO family interacting cell polarization regulator 1. (933 aa)
	ENSSPAP00000006070	Uncharacterized protein. (786 aa)
	LOC103365967	Olfactomedin-like domain-containing protein. (460 aa)
	dab2ip	DAB2 interacting protein b. (1160 aa)
	nf1	Neurofibromin 1b. (2780 aa)
	SPRY3	Sprouty RTK signaling antagonist 3. (321 aa)
	LOC103366221	Stathmin; Belongs to the stathmin family. (152 aa)
	mapkap1	MAPK associated protein 1. (481 aa)
	spry2	Sprouty RTK signaling antagonist 2. (353 aa)
	LOC103372955	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1056 aa)
	scai	Suppressor of cancer cell invasion. (565 aa)
	cul3	CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
	kctd10	Potassium channel tetramerization domain containing 10. (322 aa)
	LOC103371818	Ras-GAP domain-containing protein. (1199 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1076 aa)
	myoc	Myocilin. (482 aa)
	syngap1	Synaptic Ras GTPase activating protein 1b. (1250 aa)
	ENSSPAP00000018240	Uncharacterized protein. (124 aa)
	ENSSPAP00000016910	Si:dkey-3d4.3. (145 aa)
	LOC103374179	PL48 domain-containing protein. (763 aa)
	rasal2	RAS protein activator like 2. (1157 aa)
	ENSSPAP00000012356	Potassium channel tetramerization domain containing 13. (777 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	tnfaip1	Tumor necrosis factor, alpha-induced protein 1 (endothelial). (324 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	ENSSPAP00000012356	ENSSPAP00000019914	ENSSPAP00000012356	Cullin 3; Belongs to the cullin family.	Potassium channel tetramerization domain containing 13.	0.689
CUL3	ENSSPAP00000016910	ENSSPAP00000019914	ENSSPAP00000016910	Cullin 3; Belongs to the cullin family.	Si:dkey-3d4.3.	0.413
CUL3	LOC103357827	ENSSPAP00000019914	ENSSPAP00000012078	Cullin 3; Belongs to the cullin family.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.523
CUL3	LOC103366221	ENSSPAP00000019914	ENSSPAP00000008951	Cullin 3; Belongs to the cullin family.	Stathmin; Belongs to the stathmin family.	0.471
CUL3	cul3	ENSSPAP00000019914	ENSSPAP00000026553	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.898
CUL3	kctd10	ENSSPAP00000019914	ENSSPAP00000025746	Cullin 3; Belongs to the cullin family.	Potassium channel tetramerization domain containing 10.	0.735
CUL3	lztr1	ENSSPAP00000019914	ENSSPAP00000025040	Cullin 3; Belongs to the cullin family.	Leucine-zipper-like transcription regulator 1.	0.413
CUL3	nf1	ENSSPAP00000019914	ENSSPAP00000006844	Cullin 3; Belongs to the cullin family.	Neurofibromin 1b.	0.618
CUL3	rabgef1	ENSSPAP00000019914	ENSSPAP00000001267	Cullin 3; Belongs to the cullin family.	Uncharacterized protein.	0.523
CUL3	tnfaip1	ENSSPAP00000019914	ENSSPAP00000019690	Cullin 3; Belongs to the cullin family.	Tumor necrosis factor, alpha-induced protein 1 (endothelial).	0.702
ENSSPAP00000006070	RASA2	ENSSPAP00000006070	ENSSPAP00000014909	Uncharacterized protein.	RAS p21 protein activator 2.	0.663
ENSSPAP00000006070	RASAL1	ENSSPAP00000006070	ENSSPAP00000015916	Uncharacterized protein.	RAS protein activator like 1.	0.657
ENSSPAP00000006070	dab2ip	ENSSPAP00000006070	ENSSPAP00000006773	Uncharacterized protein.	DAB2 interacting protein b.	0.900
ENSSPAP00000006070	nf1	ENSSPAP00000006070	ENSSPAP00000006844	Uncharacterized protein.	Neurofibromin 1b.	0.674
ENSSPAP00000006070	rasa1	ENSSPAP00000006070	ENSSPAP00000001506	Uncharacterized protein.	RAS p21 protein activator (GTPase activating protein) 1a.	0.711
ENSSPAP00000006070	rasa3	ENSSPAP00000006070	ENSSPAP00000020855	Uncharacterized protein.	RAS p21 protein activator 3.	0.663
ENSSPAP00000012356	CUL3	ENSSPAP00000012356	ENSSPAP00000019914	Potassium channel tetramerization domain containing 13.	Cullin 3; Belongs to the cullin family.	0.689
ENSSPAP00000012356	cul3	ENSSPAP00000012356	ENSSPAP00000026553	Potassium channel tetramerization domain containing 13.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.689
ENSSPAP00000016910	CUL3	ENSSPAP00000016910	ENSSPAP00000019914	Si:dkey-3d4.3.	Cullin 3; Belongs to the cullin family.	0.413
ENSSPAP00000016910	cul3	ENSSPAP00000016910	ENSSPAP00000026553	Si:dkey-3d4.3.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.413