(15 nodes) Positive regulation of mRNA splicing, via spliceosome network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	LOC103357142	Uncharacterized protein. (610 aa)
	dazap1	DAZ associated protein 1. (404 aa)
	ncl	Nucleolin. (358 aa)
	cirbp	Cold inducible RNA binding protein b. (162 aa)
	LOC103353788	RRM domain-containing protein. (245 aa)
	LOC103356397	Cugbp, Elav-like family member 3a. (433 aa)
	tra2a	Transformer 2 alpha homolog. (299 aa)
	sf3b4	Splicing factor 3b, subunit 4. (402 aa)
	LOC103365291	Cugbp, Elav-like family member 3b. (495 aa)
	celf4	CUGBP, Elav-like family member 4. (427 aa)
	snw1	SNW domain containing 1. (537 aa)
	nup98	Nucleoporin 98. (1839 aa)
	tra2b	Transformer 2 beta homolog. (180 aa)
	rbmx	RNA binding motif protein X-linked. (393 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103353788	LOC103357142	ENSSPAP00000028037	ENSSPAP00000002420	RRM domain-containing protein.	Uncharacterized protein.	0.620
LOC103353788	cirbp	ENSSPAP00000028037	ENSSPAP00000030699	RRM domain-containing protein.	Cold inducible RNA binding protein b.	0.662
LOC103353788	dazap1	ENSSPAP00000028037	ENSSPAP00000003166	RRM domain-containing protein.	DAZ associated protein 1.	0.702
LOC103353788	ncl	ENSSPAP00000028037	ENSSPAP00000003422	RRM domain-containing protein.	Nucleolin.	0.653
LOC103353788	nup98	ENSSPAP00000028037	ENSSPAP00000018947	RRM domain-containing protein.	Nucleoporin 98.	0.457
LOC103353788	prpf19	ENSSPAP00000028037	ENSSPAP00000011277	RRM domain-containing protein.	Pre-mRNA processing factor 19.	0.554
LOC103353788	rbmx	ENSSPAP00000028037	ENSSPAP00000011306	RRM domain-containing protein.	RNA binding motif protein X-linked.	0.733
LOC103353788	sf3b4	ENSSPAP00000028037	ENSSPAP00000025419	RRM domain-containing protein.	Splicing factor 3b, subunit 4.	0.759
LOC103353788	snw1	ENSSPAP00000028037	ENSSPAP00000021815	RRM domain-containing protein.	SNW domain containing 1.	0.518
LOC103357142	LOC103353788	ENSSPAP00000002420	ENSSPAP00000028037	Uncharacterized protein.	RRM domain-containing protein.	0.620
LOC103357142	cirbp	ENSSPAP00000002420	ENSSPAP00000030699	Uncharacterized protein.	Cold inducible RNA binding protein b.	0.593
LOC103357142	rbmx	ENSSPAP00000002420	ENSSPAP00000011306	Uncharacterized protein.	RNA binding motif protein X-linked.	0.686
LOC103357142	sf3b4	ENSSPAP00000002420	ENSSPAP00000025419	Uncharacterized protein.	Splicing factor 3b, subunit 4.	0.598
LOC103357142	tra2a	ENSSPAP00000002420	ENSSPAP00000005383	Uncharacterized protein.	Transformer 2 alpha homolog.	0.594
LOC103357142	tra2b	ENSSPAP00000002420	ENSSPAP00000012271	Uncharacterized protein.	Transformer 2 beta homolog.	0.594
cirbp	LOC103353788	ENSSPAP00000030699	ENSSPAP00000028037	Cold inducible RNA binding protein b.	RRM domain-containing protein.	0.662
cirbp	LOC103357142	ENSSPAP00000030699	ENSSPAP00000002420	Cold inducible RNA binding protein b.	Uncharacterized protein.	0.593
cirbp	dazap1	ENSSPAP00000030699	ENSSPAP00000003166	Cold inducible RNA binding protein b.	DAZ associated protein 1.	0.780
cirbp	ncl	ENSSPAP00000030699	ENSSPAP00000003422	Cold inducible RNA binding protein b.	Nucleolin.	0.641
cirbp	nup98	ENSSPAP00000030699	ENSSPAP00000018947	Cold inducible RNA binding protein b.	Nucleoporin 98.	0.442