(42 nodes) mRNA stabilization network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000026845	SEFIR domain-containing protein. (125 aa)
	LOC103374481	Insulin-like growth factor 2 mRNA binding protein 2a. (534 aa)
	LOC103372770	Terminal nucleotidyltransferase 5C. (383 aa)
	LOC103374533	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (277 aa)
	e2f1	E2F transcription factor 1. (471 aa)
	igf2bp3	Insulin-like growth factor 2 mRNA binding protein 3. (554 aa)
	TIRAP	TIR domain containing adaptor protein. (238 aa)
	LOC103368431	Protein kinase domain-containing protein. (154 aa)
	gdnf	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (254 aa)
	LOC103370123	Terminal nucleotidyltransferase 5Bb. (459 aa)
	LOC103372915	Uncharacterized protein. (431 aa)
	fus	FUS RNA binding protein. (502 aa)
	LOC103360059	RNA binding motif protein 24b. (236 aa)
	LOC103360073	Insulin-like growth factor 2 mRNA binding protein 1. (592 aa)
	LOC103370183	RRM domain-containing protein. (79 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1269 aa)
	LOC103366316	Terminal nucleotidyltransferase 5D. (393 aa)
	LOC103357865	Uncharacterized protein. (452 aa)
	LOC103375326	Endo/exonuclease/phosphatase domain-containing protein. (367 aa)
	LOC103373045	RRM domain-containing protein. (250 aa)
	LOC103369104	ELAV-like protein; Belongs to the RRM elav family. (359 aa)
	MAPKAPK2	MAPK activated protein kinase 2; Belongs to the protein kinase superfamily. (385 aa)
	ENSSPAP00000016683	RRM domain-containing protein. (230 aa)
	tent5b	Terminal nucleotidyltransferase 5ba. (388 aa)
	elavl1	ELAV-like protein; Belongs to the RRM elav family. (348 aa)
	ENSSPAP00000018165	RNA binding motif protein 46. (444 aa)
	dazl	Deleted in azoospermia-like. (200 aa)
	rbm24	RNA binding motif protein 24a. (231 aa)
	LOC103376478	QKI, KH domain containing, RNA binding a. (389 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E nuclear import factor 1. (960 aa)
	LOC103356949	TRAF3 interacting protein 2-like. (436 aa)
	LOC103365828	Angel homolog 2 (Drosophila). (744 aa)
	vip	Vasoactive intestinal peptide. (164 aa)
	TENT5A	Terminal nucleotidyltransferase 5A. (401 aa)
	LOC103376168	SEFIR domain-containing protein. (437 aa)
	RBM38	RNA binding motif protein 38. (244 aa)
	LOC103372712	Protein FAM46A-like. (431 aa)
	LOC103363223	DND microRNA-mediated repression inhibitor 1. (388 aa)
	noct	Nocturnin. (465 aa)
	ybx1	Y box binding protein 1. (324 aa)
	LOC103376189	Uncharacterized protein. (752 aa)
	ENSSPAP00000027697	Uncharacterized protein. (101 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000016683	ENSSPAP00000018165	ENSSPAP00000016683	ENSSPAP00000018165	RRM domain-containing protein.	RNA binding motif protein 46.	0.467
ENSSPAP00000016683	LOC103357865	ENSSPAP00000016683	ENSSPAP00000013962	RRM domain-containing protein.	Uncharacterized protein.	0.511
ENSSPAP00000016683	LOC103363223	ENSSPAP00000016683	ENSSPAP00000031377	RRM domain-containing protein.	DND microRNA-mediated repression inhibitor 1.	0.469
ENSSPAP00000016683	dhx9	ENSSPAP00000016683	ENSSPAP00000012850	RRM domain-containing protein.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.414
ENSSPAP00000016683	fus	ENSSPAP00000016683	ENSSPAP00000008383	RRM domain-containing protein.	FUS RNA binding protein.	0.511
ENSSPAP00000016683	ybx1	ENSSPAP00000016683	ENSSPAP00000027434	RRM domain-containing protein.	Y box binding protein 1.	0.506
ENSSPAP00000018165	ENSSPAP00000016683	ENSSPAP00000018165	ENSSPAP00000016683	RNA binding motif protein 46.	RRM domain-containing protein.	0.467
ENSSPAP00000018165	ENSSPAP00000027697	ENSSPAP00000018165	ENSSPAP00000027697	RNA binding motif protein 46.	Uncharacterized protein.	0.489
ENSSPAP00000018165	LOC103357865	ENSSPAP00000018165	ENSSPAP00000013962	RNA binding motif protein 46.	Uncharacterized protein.	0.620
ENSSPAP00000018165	dazl	ENSSPAP00000018165	ENSSPAP00000018221	RNA binding motif protein 46.	Deleted in azoospermia-like.	0.728
ENSSPAP00000018165	fus	ENSSPAP00000018165	ENSSPAP00000008383	RNA binding motif protein 46.	FUS RNA binding protein.	0.620
ENSSPAP00000018165	ybx1	ENSSPAP00000018165	ENSSPAP00000027434	RNA binding motif protein 46.	Y box binding protein 1.	0.661
ENSSPAP00000026845	LOC103376478	ENSSPAP00000026845	ENSSPAP00000022741	SEFIR domain-containing protein.	QKI, KH domain containing, RNA binding a.	0.477
ENSSPAP00000026845	TIRAP	ENSSPAP00000026845	ENSSPAP00000006687	SEFIR domain-containing protein.	TIR domain containing adaptor protein.	0.524
ENSSPAP00000027697	ENSSPAP00000018165	ENSSPAP00000027697	ENSSPAP00000018165	Uncharacterized protein.	RNA binding motif protein 46.	0.489
LOC103356949	LOC103376478	ENSSPAP00000023505	ENSSPAP00000022741	TRAF3 interacting protein 2-like.	QKI, KH domain containing, RNA binding a.	0.477
LOC103356949	TIRAP	ENSSPAP00000023505	ENSSPAP00000006687	TRAF3 interacting protein 2-like.	TIR domain containing adaptor protein.	0.524
LOC103357865	ENSSPAP00000016683	ENSSPAP00000013962	ENSSPAP00000016683	Uncharacterized protein.	RRM domain-containing protein.	0.511
LOC103357865	ENSSPAP00000018165	ENSSPAP00000013962	ENSSPAP00000018165	Uncharacterized protein.	RNA binding motif protein 46.	0.620
LOC103357865	LOC103363223	ENSSPAP00000013962	ENSSPAP00000031377	Uncharacterized protein.	DND microRNA-mediated repression inhibitor 1.	0.620