15 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ankrd13a	Ankyrin repeat domain 13A. (601 aa)
	UNC119	Unc-119 lipid binding chaperone. (254 aa)
	lrrtm1	Leucine rich repeat transmembrane neuronal 1. (525 aa)
	unc119	GMP_PDE_delta domain-containing protein. (140 aa)
	lrrtm2	Leucine rich repeat transmembrane neuronal 2. (528 aa)
	ankrd13d	Ankyrin repeat domain 13 family, member D. (629 aa)
	pcsk9	Proprotein convertase subtilisin/kexin type 9. (669 aa)
	ankrd13b	Ankyrin repeat domain 13B. (502 aa)
	wdr54	WD repeat domain 54. (336 aa)
	neu3	Sialidase 3 (membrane sialidase), tandem duplicate 1. (410 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	atxn2	Ataxin 2. (1081 aa)
	LOC103367270	VPS9 domain-containing protein. (1015 aa)
	lrpap1	Low density lipoprotein receptor-related protein associated protein 1. (347 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103357827	LOC103367270	ENSSPAP00000012078	ENSSPAP00000007592	RAB guanine nucleotide exchange factor (GEF) 1, like.	VPS9 domain-containing protein.	0.723
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
LOC103367270	LOC103357827	ENSSPAP00000007592	ENSSPAP00000012078	VPS9 domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.723
LOC103367270	rabgef1	ENSSPAP00000007592	ENSSPAP00000001267	VPS9 domain-containing protein.	Uncharacterized protein.	0.723
rabgef1	LOC103357827	ENSSPAP00000001267	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.672
rabgef1	LOC103367270	ENSSPAP00000001267	ENSSPAP00000007592	Uncharacterized protein.	VPS9 domain-containing protein.	0.723