(12 nodes) Determination of dorsal identity network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103364326	Mitogen-activated protein kinase. (437 aa)
	gid8	GID complex subunit 8 homolog b (S. cerevisiae). (228 aa)
	LOC103355704	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (353 aa)
	LOC103355705	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (340 aa)
	fst	Follistatin a. (348 aa)
	GREM1	Gremlin; Belongs to the DAN family. (172 aa)
	grem1	Gremlin 1a, DAN family BMP antagonist. (179 aa)
	mapk10	Mitogen-activated protein kinase. (435 aa)
	grem2	Gremlin 2, DAN family BMP antagonist a. (190 aa)
	GID8	GID complex subunit 8 homolog. (229 aa)
	fgf8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (213 aa)
	LOC103373315	Mitogen-activated protein kinase. (380 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GREM1	grem1	ENSSPAP00000026047	ENSSPAP00000021049	Gremlin; Belongs to the DAN family.	Gremlin 1a, DAN family BMP antagonist.	0.899
GREM1	grem2	ENSSPAP00000026047	ENSSPAP00000020159	Gremlin; Belongs to the DAN family.	Gremlin 2, DAN family BMP antagonist a.	0.901
LOC103364326	mapk10	ENSSPAP00000029803	ENSSPAP00000020500	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.808
LOC103373315	mapk10	ENSSPAP00000030915	ENSSPAP00000020500	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.807
fgf8	fst	ENSSPAP00000018468	ENSSPAP00000012772	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Follistatin a.	0.454
fst	fgf8	ENSSPAP00000012772	ENSSPAP00000018468	Follistatin a.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.454
grem1	GREM1	ENSSPAP00000021049	ENSSPAP00000026047	Gremlin 1a, DAN family BMP antagonist.	Gremlin; Belongs to the DAN family.	0.899
grem1	grem2	ENSSPAP00000021049	ENSSPAP00000020159	Gremlin 1a, DAN family BMP antagonist.	Gremlin 2, DAN family BMP antagonist a.	0.902
grem2	GREM1	ENSSPAP00000020159	ENSSPAP00000026047	Gremlin 2, DAN family BMP antagonist a.	Gremlin; Belongs to the DAN family.	0.901
grem2	grem1	ENSSPAP00000020159	ENSSPAP00000021049	Gremlin 2, DAN family BMP antagonist a.	Gremlin 1a, DAN family BMP antagonist.	0.902
mapk10	LOC103364326	ENSSPAP00000020500	ENSSPAP00000029803	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.808
mapk10	LOC103373315	ENSSPAP00000020500	ENSSPAP00000030915	Mitogen-activated protein kinase.	Mitogen-activated protein kinase.	0.807