(9 nodes) Dorsal convergence network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103367097	Vang-like protein. (525 aa)
	wnt5b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (371 aa)
	LOC103369234	Vang-like protein. (526 aa)
	bmp2	Bone morphogenetic protein 2b. (416 aa)
	LOC103363483	Mothers against decapentaplegic homolog. (476 aa)
	LOC103367232	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (378 aa)
	chrd	Chordin; Belongs to the chordin family. (953 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (906 aa)
	LOC103355473	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (918 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	LOC103355473	ENSSPAP00000001222	ENSSPAP00000000369	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.899
LOC103355473	CDH2	ENSSPAP00000000369	ENSSPAP00000001222	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.899
LOC103363483	bmp2	ENSSPAP00000014003	ENSSPAP00000015145	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 2b.	0.758
LOC103363483	chrd	ENSSPAP00000014003	ENSSPAP00000005772	Mothers against decapentaplegic homolog.	Chordin; Belongs to the chordin family.	0.575
LOC103367097	LOC103367232	ENSSPAP00000028012	ENSSPAP00000005834	Vang-like protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.518
LOC103367097	LOC103369234	ENSSPAP00000028012	ENSSPAP00000020873	Vang-like protein.	Vang-like protein.	0.898
LOC103367097	wnt5b	ENSSPAP00000028012	ENSSPAP00000030765	Vang-like protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.518
LOC103367232	LOC103367097	ENSSPAP00000005834	ENSSPAP00000028012	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Vang-like protein.	0.518
LOC103367232	LOC103369234	ENSSPAP00000005834	ENSSPAP00000020873	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Vang-like protein.	0.518
LOC103367232	wnt5b	ENSSPAP00000005834	ENSSPAP00000030765	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.899
LOC103369234	LOC103367097	ENSSPAP00000020873	ENSSPAP00000028012	Vang-like protein.	Vang-like protein.	0.898
LOC103369234	LOC103367232	ENSSPAP00000020873	ENSSPAP00000005834	Vang-like protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.518
LOC103369234	wnt5b	ENSSPAP00000020873	ENSSPAP00000030765	Vang-like protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.518
bmp2	LOC103363483	ENSSPAP00000015145	ENSSPAP00000014003	Bone morphogenetic protein 2b.	Mothers against decapentaplegic homolog.	0.758
bmp2	chrd	ENSSPAP00000015145	ENSSPAP00000005772	Bone morphogenetic protein 2b.	Chordin; Belongs to the chordin family.	0.977
chrd	LOC103363483	ENSSPAP00000005772	ENSSPAP00000014003	Chordin; Belongs to the chordin family.	Mothers against decapentaplegic homolog.	0.575
chrd	bmp2	ENSSPAP00000005772	ENSSPAP00000015145	Chordin; Belongs to the chordin family.	Bone morphogenetic protein 2b.	0.977
wnt5b	LOC103367097	ENSSPAP00000030765	ENSSPAP00000028012	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Vang-like protein.	0.518
wnt5b	LOC103367232	ENSSPAP00000030765	ENSSPAP00000005834	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.899
wnt5b	LOC103369234	ENSSPAP00000030765	ENSSPAP00000020873	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Vang-like protein.	0.518