STRINGSTRING
LOC103360971 LOC103360971 ENSSPAP00000024373 ENSSPAP00000024373 cnot1 cnot1 CNOT7 CNOT7 LOC103367052 LOC103367052 LOC103367053 LOC103367053 LOC103371553 LOC103371553 ago2 ago2 LOC103368117 LOC103368117 pan2 pan2 lsm1 lsm1 LOC103374411 LOC103374411 dis3l2 dis3l2 lrrc27 lrrc27 samd4b samd4b mlh1 mlh1 dhx36 dhx36 noct noct exosc2 exosc2 cnot6l cnot6l pan3 pan3 rc3h1 rc3h1 LOC103366440 LOC103366440 LOC103361824 LOC103361824 mettl3 mettl3 ttc5 ttc5 polr2d polr2d cnot6 cnot6 gtpbp1 gtpbp1 ythdf3 ythdf3 LOC103366045 LOC103366045 LOC103356046 LOC103356046 patl1 patl1 dcps dcps exosc8 exosc8 YTHDF1 YTHDF1 cnot3 cnot3 LOC103368936 LOC103368936 exosc9 exosc9 exosc7 exosc7 LOC103368395 LOC103368395 patl2 patl2 rc3h2 rc3h2 exosc3 exosc3 dcp1a dcp1a LOC103371799 LOC103371799 ENSSPAP00000008883 ENSSPAP00000008883 cnot2 cnot2 LOC103363970 LOC103363970 LOC103366231 LOC103366231 samd4a samd4a cnot8 cnot8 LOC103360059 LOC103360059 ENSSPAP00000010665 ENSSPAP00000010665 ENSSPAP00000010685 ENSSPAP00000010685 ENSSPAP00000010739 ENSSPAP00000010739 nanos3 nanos3 ENSSPAP00000011494 ENSSPAP00000011494 zfp36l2 zfp36l2 zfp36l1 zfp36l1 mettl16 mettl16 LOC103375326 LOC103375326 LOC103366853 LOC103366853 plekhn1 plekhn1 zc3h12a zc3h12a LOC103364512 LOC103364512 tnrc6a tnrc6a mettl14 mettl14 ENSSPAP00000019704 ENSSPAP00000019704 LOC103361861 LOC103361861 pde12 pde12 LOC103354577 LOC103354577 RIDA RIDA rbm24 rbm24 fto fto polr2g polr2g LOC103360139 LOC103360139 PNPT1 PNPT1 ythdf2 ythdf2 dicer1 dicer1 EIF4ENIF1 EIF4ENIF1 exosc5 exosc5 ENSSPAP00000024273 ENSSPAP00000024273 ENSSPAP00000024293 ENSSPAP00000024293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC103360971Moloney leukemia virus 10b, tandem duplicate 1. (999 aa)
ENSSPAP00000024373Uncharacterized protein. (701 aa)
cnot1CCR4-NOT transcription complex, subunit 1. (2333 aa)
CNOT7CCR4-NOT transcription complex subunit 7. (249 aa)
LOC103367052Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (867 aa)
LOC103367053Argonaute RISC component 1; Belongs to the argonaute family. (858 aa)
LOC103371553Reactive intermediate imine deaminase A homolog. (135 aa)
ago2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (875 aa)
LOC103368117Si:dkey-46g23.1. (2066 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1210 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
LOC103374411Si:dkey-206d17.12. (601 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1052 aa)
lrrc27Uncharacterized protein. (428 aa)
samd4bSterile alpha motif domain containing 4B. (671 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (738 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1066 aa)
noctNocturnin. (465 aa)
exosc2Exosome component 2. (293 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (553 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (793 aa)
rc3h1Ring finger and CCCH-type domains 1b. (1136 aa)
LOC103366440NOT2_3_5 domain-containing protein. (536 aa)
LOC103361824Sb:cb81. (397 aa)
mettl3Methyltransferase like 3; Belongs to the MT-A70-like family. (591 aa)
ttc5Tetratricopeptide repeat domain 5. (447 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
cnot6CCR4-NOT transcription complex, subunit 6a. (559 aa)
gtpbp1GTP binding protein 1. (665 aa)
ythdf3YTH N(6)-methyladenosine RNA binding protein 3. (606 aa)
LOC103366045CCR4-NOT transcription complex, subunit 3b. (929 aa)
LOC103356046Mov10 RISC complex RNA helicase a. (999 aa)
patl1PAT1 homolog 1, processing body mRNA decay factor. (752 aa)
dcpsDecapping enzyme, scavenger. (330 aa)
exosc8Exosome component 8. (277 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (618 aa)
cnot3CCR4-NOT transcription complex, subunit 3a. (891 aa)
LOC103368936Nanos homolog 2; Belongs to the nanos family. (155 aa)
exosc9Exosome component 9. (420 aa)
exosc7Exosome component 7. (291 aa)
LOC103368395TNRC6-PABC_bdg domain-containing protein. (2144 aa)
patl2PAT1 homolog 2. (625 aa)
rc3h2Ring finger and CCCH-type domains 2. (1156 aa)
exosc3Exosome component 3. (244 aa)
dcp1aDecapping mRNA 1A. (506 aa)
LOC103371799Tr-type G domain-containing protein. (657 aa)
ENSSPAP00000008883Uncharacterized protein. (58 aa)
cnot2CCR4-NOT transcription complex, subunit 2. (451 aa)
LOC103363970Zgc:162730. (425 aa)
LOC103366231Poly(A)-specific ribonuclease (deadenylation nuclease). (682 aa)
samd4aSterile alpha motif domain containing 4A. (604 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (285 aa)
LOC103360059RNA binding motif protein 24b. (236 aa)
ENSSPAP00000010665Uncharacterized protein. (146 aa)
ENSSPAP00000010685Uncharacterized protein. (143 aa)
ENSSPAP00000010739Uncharacterized protein. (641 aa)
nanos3Nanos homolog 3; Belongs to the nanos family. (216 aa)
ENSSPAP00000011494Uncharacterized protein. (117 aa)
zfp36l2Zinc finger protein 36, C3H type-like 2. (430 aa)
zfp36l1Zinc finger protein 36, C3H type-like 1a. (372 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (556 aa)
LOC103375326Endo/exonuclease/phosphatase domain-containing protein. (367 aa)
LOC103366853CCR4-NOT transcription complex, subunit 7. (248 aa)
plekhn1Pleckstrin homology domain containing, family N member 1. (707 aa)
zc3h12aZinc finger CCCH-type containing 12A. (621 aa)
LOC103364512Trinucleotide repeat containing adaptor 6C2. (1892 aa)
tnrc6aTrinucleotide repeat containing adaptor 6A. (1791 aa)
mettl14Methyltransferase like 14; Belongs to the MT-A70-like family. (456 aa)
ENSSPAP00000019704Decapping mRNA 2. (248 aa)
LOC103361861Trinucleotide repeat containing adaptor 6C1. (1839 aa)
pde12Phosphodiesterase 12. (591 aa)
LOC103354577YTH N(6)-methyladenosine RNA binding protein 1. (623 aa)
RIDAReactive intermediate imine deaminase A homolog. (136 aa)
rbm24RNA binding motif protein 24a. (231 aa)
ftoFTO alpha-ketoglutarate dependent dioxygenase. (658 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (171 aa)
LOC103360139Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (876 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (770 aa)
ythdf2YTH N(6)-methyladenosine RNA binding protein 2. (638 aa)
dicer1Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1889 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (960 aa)
exosc5Exosome component 5. (220 aa)
ENSSPAP00000024273C2H2-type domain-containing protein. (151 aa)
ENSSPAP00000024293Uncharacterized protein. (148 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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