53 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103365080	Fam20C domain-containing protein. (560 aa)
	ENSSPAP00000000241	Uncharacterized protein; Belongs to the tropomyosin family. (269 aa)
	sh2b3	SH2B adaptor protein 3. (749 aa)
	LOC103354955	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	epo	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family. (185 aa)
	slc40a1	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily. (573 aa)
	lyar	Ly1 antibody reactive homolog (mouse). (338 aa)
	tspan2	Tetraspanin. (219 aa)
	LOC103360505	Phospholipase A(2). (153 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	LOC103361614	Tyrosine-protein kinase. (537 aa)
	LOC103361681	ATPase H+ transporting accessory protein 1b. (469 aa)
	smad1	Mothers against decapentaplegic homolog. (467 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)
	LOC103362803	Tetraspanin. (211 aa)
	rnf145	Ring finger protein 145b. (770 aa)
	nrros	Negative regulator of reactive oxygen species. (686 aa)
	tpm3	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	SRF	Serum response factor. (601 aa)
	ABI1	Abl-interactor 1a. (481 aa)
	ENSSPAP00000009508	Nuclear factor, interleukin 3 regulated. (423 aa)
	LOC103369541	Zmp:0000000662. (814 aa)
	LOC103370178	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (270 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	alas2	5-aminolevulinate synthase. (591 aa)
	LOC103372356	Tyrosine-protein kinase. (544 aa)
	LOC103361753	FAM20C golgi associated secretory pathway kinase a. (573 aa)
	ENSSPAP00000015564	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (391 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	LOC103354132	Ribosomal protein S19. (146 aa)
	bdh2	3-hydroxybutyrate dehydrogenase, type 2. (245 aa)
	tpm4	Tropomyosin 4; Belongs to the tropomyosin family. (302 aa)
	lmo2	LIM domain only 2 (rhombotin-like 1). (160 aa)
	LOC103365158	T-cell acute lymphocytic leukemia 1. (388 aa)
	tpm2	Tropomyosin 2 (beta); Belongs to the tropomyosin family. (302 aa)
	ENSSPAP00000020709	LRRNT domain-containing protein. (90 aa)
	LOC103365216	Tropomyosin 4a; Belongs to the tropomyosin family. (284 aa)
	ENSSPAP00000021526	BHLH domain-containing protein. (108 aa)
	SRF-2	Serum response factor. (478 aa)
	ep300	E1A binding protein p300 b. (2872 aa)
	LOC103368772	Glycoprotein IX (platelet). (248 aa)
	RPS19	Ribosomal protein S19. (152 aa)
	LOC103371456	Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family. (397 aa)
	tert	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1107 aa)
	melk	Non-specific serine/threonine protein kinase. (679 aa)
	LOC103354342	Abl-interactor 1b. (491 aa)
	maea	Macrophage erythroblast attacher. (396 aa)
	med1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1827 aa)
	atp6ap1	ATPase H+ transporting accessory protein 1a. (463 aa)
	LOC103365900	GATA binding protein 1a. (425 aa)
	TPM1	Uncharacterized protein; Belongs to the tropomyosin family. (362 aa)
	lrrk1	Leucine-rich repeat kinase 1. (2006 aa)
	LOC103371563	E1A binding protein p300 a. (2869 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI1	LOC103361614	ENSSPAP00000008819	ENSSPAP00000002823	Abl-interactor 1a.	Tyrosine-protein kinase.	0.521
ABI1	LOC103372356	ENSSPAP00000008819	ENSSPAP00000014299	Abl-interactor 1a.	Tyrosine-protein kinase.	0.521
ENSSPAP00000020709	LOC103361614	ENSSPAP00000020709	ENSSPAP00000002823	LRRNT domain-containing protein.	Tyrosine-protein kinase.	0.709
ENSSPAP00000020709	LOC103368772	ENSSPAP00000020709	ENSSPAP00000026163	LRRNT domain-containing protein.	Glycoprotein IX (platelet).	0.952
ENSSPAP00000020709	LOC103372356	ENSSPAP00000020709	ENSSPAP00000014299	LRRNT domain-containing protein.	Tyrosine-protein kinase.	0.709
ENSSPAP00000021526	LOC103365900	ENSSPAP00000021526	ENSSPAP00000028230	BHLH domain-containing protein.	GATA binding protein 1a.	0.907
ENSSPAP00000021526	LOC103371563	ENSSPAP00000021526	ENSSPAP00000030493	BHLH domain-containing protein.	E1A binding protein p300 a.	0.579
ENSSPAP00000021526	ep300	ENSSPAP00000021526	ENSSPAP00000023258	BHLH domain-containing protein.	E1A binding protein p300 b.	0.579
ENSSPAP00000021526	lmo2	ENSSPAP00000021526	ENSSPAP00000018565	BHLH domain-containing protein.	LIM domain only 2 (rhombotin-like 1).	0.980
LOC103354132	RPS19	ENSSPAP00000017355	ENSSPAP00000027041	Ribosomal protein S19.	Ribosomal protein S19.	0.899
LOC103354132	lyar	ENSSPAP00000017355	ENSSPAP00000001624	Ribosomal protein S19.	Ly1 antibody reactive homolog (mouse).	0.849
LOC103354132	med1	ENSSPAP00000017355	ENSSPAP00000028174	Ribosomal protein S19.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.983
LOC103354342	LOC103361614	ENSSPAP00000027881	ENSSPAP00000002823	Abl-interactor 1b.	Tyrosine-protein kinase.	0.521
LOC103354342	LOC103372356	ENSSPAP00000027881	ENSSPAP00000014299	Abl-interactor 1b.	Tyrosine-protein kinase.	0.521
LOC103357838	LOC103361614	ENSSPAP00000012523	ENSSPAP00000002823	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.702
LOC103357838	LOC103372356	ENSSPAP00000012523	ENSSPAP00000014299	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.702
LOC103357838	ptpn11	ENSSPAP00000012523	ENSSPAP00000015764	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.899
LOC103361614	ABI1	ENSSPAP00000002823	ENSSPAP00000008819	Tyrosine-protein kinase.	Abl-interactor 1a.	0.521
LOC103361614	ENSSPAP00000020709	ENSSPAP00000002823	ENSSPAP00000020709	Tyrosine-protein kinase.	LRRNT domain-containing protein.	0.709
LOC103361614	LOC103354342	ENSSPAP00000002823	ENSSPAP00000027881	Tyrosine-protein kinase.	Abl-interactor 1b.	0.521