(13 nodes) C2H2 zinc finger domain binding network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000017217	SET domain-containing protein. (163 aa)
	ENSSPAP00000011206	High mobility group AT-hook 2. (108 aa)
	LOC103362742	Uncharacterized protein. (120 aa)
	LOC103366163	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
	wt1	WT1 transcription factor b. (426 aa)
	THAP7	THAP domain containing 7. (258 aa)
	LOC103361279	Lymphoid enhancer-binding factor 1. (364 aa)
	ENSSPAP00000001764	ANK_REP_REGION domain-containing protein. (141 aa)
	LOC103365900	GATA binding protein 1a. (425 aa)
	ehmt1	Euchromatic histone-lysine N-methyltransferase 1b. (1198 aa)
	u2af2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
	LOC103369302	WT1 transcription factor a. (432 aa)
	ENSSPAP00000017204	ANK_REP_REGION domain-containing protein. (114 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000001764	ENSSPAP00000017217	ENSSPAP00000001764	ENSSPAP00000017217	ANK_REP_REGION domain-containing protein.	SET domain-containing protein.	0.721
ENSSPAP00000017204	ENSSPAP00000017217	ENSSPAP00000017204	ENSSPAP00000017217	ANK_REP_REGION domain-containing protein.	SET domain-containing protein.	0.886
ENSSPAP00000017217	ENSSPAP00000001764	ENSSPAP00000017217	ENSSPAP00000001764	SET domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.721
ENSSPAP00000017217	ENSSPAP00000017204	ENSSPAP00000017217	ENSSPAP00000017204	SET domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.886
LOC103365900	LOC103369302	ENSSPAP00000028230	ENSSPAP00000023395	GATA binding protein 1a.	WT1 transcription factor a.	0.414
LOC103365900	wt1	ENSSPAP00000028230	ENSSPAP00000006664	GATA binding protein 1a.	WT1 transcription factor b.	0.414
LOC103366163	u2af2	ENSSPAP00000006829	ENSSPAP00000029951	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.899
LOC103369302	LOC103365900	ENSSPAP00000023395	ENSSPAP00000028230	WT1 transcription factor a.	GATA binding protein 1a.	0.414
u2af2	LOC103366163	ENSSPAP00000029951	ENSSPAP00000006829	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.899
wt1	LOC103365900	ENSSPAP00000006664	ENSSPAP00000028230	WT1 transcription factor b.	GATA binding protein 1a.	0.414