(25 nodes) Protein K11-linked ubiquitination network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103374493	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (150 aa)
	anapc10	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (186 aa)
	cdc23	CDC23 (cell division cycle 23, yeast, homolog). (605 aa)
	rnf26	Ring finger protein 26. (422 aa)
	LOC103352853	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	anapc13	Anaphase promoting complex subunit 13. (74 aa)
	prkn	RBR-type E3 ubiquitin transferase. (341 aa)
	anapc2	Anaphase promoting complex subunit 2; Belongs to the cullin family. (778 aa)
	ENSSPAP00000008959	Uncharacterized protein. (40 aa)
	cdc16	Cell division cycle 16 homolog (S. cerevisiae). (619 aa)
	anapc7	Anaphase promoting complex subunit 7. (565 aa)
	AREL1	Apoptosis resistant E3 ubiquitin protein ligase 1. (1020 aa)
	ube2a	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	cdc26	Cell division cycle 26 homolog. (97 aa)
	ube2l3	Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	cdc27	Cell division cycle 27. (803 aa)
	anapc4	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family. (805 aa)
	anapc5	Anaphase promoting complex subunit 5. (773 aa)
	anapc11	APC11 anaphase promoting complex subunit 11 homolog (yeast). (84 aa)
	ube2s	Ubiquitin-conjugating enzyme E2S; Belongs to the ubiquitin-conjugating enzyme family. (237 aa)
	rnf4	Ring finger protein 4. (204 aa)
	anapc1	Anaphase promoting complex subunit 1. (1982 aa)
	ube2h	Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	ube2b	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	ube2c	Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AREL1	ENSSPAP00000008959	ENSSPAP00000011922	ENSSPAP00000008959	Apoptosis resistant E3 ubiquitin protein ligase 1.	Uncharacterized protein.	0.422
AREL1	LOC103352853	ENSSPAP00000011922	ENSSPAP00000007280	Apoptosis resistant E3 ubiquitin protein ligase 1.	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	0.422
AREL1	ube2a	ENSSPAP00000011922	ENSSPAP00000013402	Apoptosis resistant E3 ubiquitin protein ligase 1.	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.422
AREL1	ube2b	ENSSPAP00000011922	ENSSPAP00000027067	Apoptosis resistant E3 ubiquitin protein ligase 1.	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.422
AREL1	ube2s	ENSSPAP00000011922	ENSSPAP00000021767	Apoptosis resistant E3 ubiquitin protein ligase 1.	Ubiquitin-conjugating enzyme E2S; Belongs to the ubiquitin-conjugating enzyme family.	0.462
ENSSPAP00000008959	AREL1	ENSSPAP00000008959	ENSSPAP00000011922	Uncharacterized protein.	Apoptosis resistant E3 ubiquitin protein ligase 1.	0.422
ENSSPAP00000008959	LOC103374493	ENSSPAP00000008959	ENSSPAP00000001098	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.668
ENSSPAP00000008959	anapc1	ENSSPAP00000008959	ENSSPAP00000025802	Uncharacterized protein.	Anaphase promoting complex subunit 1.	0.660
ENSSPAP00000008959	anapc10	ENSSPAP00000008959	ENSSPAP00000001732	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.629
ENSSPAP00000008959	anapc11	ENSSPAP00000008959	ENSSPAP00000019376	Uncharacterized protein.	APC11 anaphase promoting complex subunit 11 homolog (yeast).	0.615
ENSSPAP00000008959	anapc13	ENSSPAP00000008959	ENSSPAP00000007414	Uncharacterized protein.	Anaphase promoting complex subunit 13.	0.402
ENSSPAP00000008959	anapc2	ENSSPAP00000008959	ENSSPAP00000008245	Uncharacterized protein.	Anaphase promoting complex subunit 2; Belongs to the cullin family.	0.636
ENSSPAP00000008959	anapc4	ENSSPAP00000008959	ENSSPAP00000019092	Uncharacterized protein.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.716
ENSSPAP00000008959	anapc5	ENSSPAP00000008959	ENSSPAP00000019207	Uncharacterized protein.	Anaphase promoting complex subunit 5.	0.659
ENSSPAP00000008959	anapc7	ENSSPAP00000008959	ENSSPAP00000010469	Uncharacterized protein.	Anaphase promoting complex subunit 7.	0.623
ENSSPAP00000008959	cdc16	ENSSPAP00000008959	ENSSPAP00000010389	Uncharacterized protein.	Cell division cycle 16 homolog (S. cerevisiae).	0.674
ENSSPAP00000008959	cdc23	ENSSPAP00000008959	ENSSPAP00000003367	Uncharacterized protein.	CDC23 (cell division cycle 23, yeast, homolog).	0.550
ENSSPAP00000008959	cdc26	ENSSPAP00000008959	ENSSPAP00000015014	Uncharacterized protein.	Cell division cycle 26 homolog.	0.612
ENSSPAP00000008959	cdc27	ENSSPAP00000008959	ENSSPAP00000015941	Uncharacterized protein.	Cell division cycle 27.	0.522
ENSSPAP00000008959	prkn	ENSSPAP00000008959	ENSSPAP00000007653	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.697