(10 nodes) Glomerulus vasculature development network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103362426	Endothelin receptor type Ab. (313 aa)
	LOC103358541	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family. (520 aa)
	ENSSPAP00000016421	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (115 aa)
	LOC103375319	Platelet/endothelial cell adhesion molecule 1. (789 aa)
	ednra	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (451 aa)
	LOC103358083	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (260 aa)
	LOC103358082	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (291 aa)
	pdgfb	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (569 aa)
	ENSSPAP00000021979	Si:dkey-237i9.8. (611 aa)
	tcf21	Transcription factor 21. (173 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000021979	LOC103358541	ENSSPAP00000021979	ENSSPAP00000017591	Si:dkey-237i9.8.	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family.	0.459
ENSSPAP00000021979	pdgfb	ENSSPAP00000021979	ENSSPAP00000023607	Si:dkey-237i9.8.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.459
LOC103358541	ENSSPAP00000021979	ENSSPAP00000017591	ENSSPAP00000021979	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family.	Si:dkey-237i9.8.	0.459
LOC103358541	LOC103375319	ENSSPAP00000017591	ENSSPAP00000014867	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family.	Platelet/endothelial cell adhesion molecule 1.	0.459
LOC103362426	ednra	ENSSPAP00000018883	ENSSPAP00000004293	Endothelin receptor type Ab.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.899
LOC103375319	LOC103358541	ENSSPAP00000014867	ENSSPAP00000017591	Platelet/endothelial cell adhesion molecule 1.	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family.	0.459
LOC103375319	pdgfb	ENSSPAP00000014867	ENSSPAP00000023607	Platelet/endothelial cell adhesion molecule 1.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.459
ednra	LOC103362426	ENSSPAP00000004293	ENSSPAP00000018883	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Ab.	0.899
pdgfb	ENSSPAP00000021979	ENSSPAP00000023607	ENSSPAP00000021979	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Si:dkey-237i9.8.	0.459
pdgfb	LOC103375319	ENSSPAP00000023607	ENSSPAP00000014867	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Platelet/endothelial cell adhesion molecule 1.	0.459