46 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	itga1	Integrin, alpha 1; Belongs to the integrin alpha chain family. (1187 aa)
	itga10	Integrin, alpha 10; Belongs to the integrin alpha chain family. (1171 aa)
	LOC103356464	Tenascin C. (1729 aa)
	itga9	Integrin, alpha 9; Belongs to the integrin alpha chain family. (1031 aa)
	ITGA7	Integrin subunit alpha 7; Belongs to the integrin alpha chain family. (1075 aa)
	LOC103365304	Integrin beta; Belongs to the integrin beta chain family. (784 aa)
	LOC103365860	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family. (1057 aa)
	itgb1	Integrin beta; Belongs to the integrin beta chain family. (802 aa)
	ENSSPAP00000024618	Integrin beta; Belongs to the integrin beta chain family. (754 aa)
	LOC103374965	Zmp:0000000846. (2380 aa)
	LOC103366539	VWFA domain-containing protein; Belongs to the integrin alpha chain family. (1204 aa)
	ENSSPAP00000021246	Integrin_b_cyt domain-containing protein. (110 aa)
	LOC103366961	Integrin beta. (429 aa)
	LOC103366491	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	LOC103376046	Vitronectin a. (515 aa)
	plaur-2	Uncharacterized protein. (207 aa)
	plaur	Uncharacterized protein. (208 aa)
	jam3	Junctional adhesion molecule 3a. (333 aa)
	ENSSPAP00000018988	Uncharacterized protein. (158 aa)
	ENSSPAP00000018240	Uncharacterized protein. (124 aa)
	jam2	Junctional adhesion molecule 2a. (310 aa)
	itga2b	Integrin, alpha 2b; Belongs to the integrin alpha chain family. (1011 aa)
	LOC103357892	Junctional adhesion molecule 3b. (302 aa)
	itgb4	Integrin beta. (1992 aa)
	LOC103366332	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1053 aa)
	LOC103372345	Elastin microfibril interfacer 1a. (1037 aa)
	LOC103362295	Vitronectin b. (446 aa)
	itga2	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family. (1185 aa)
	tnr	Tenascin R (restrictin, janusin). (1093 aa)
	itga4	Integrin alpha 4; Belongs to the integrin alpha chain family. (957 aa)
	itga11	Integrin, alpha 11a; Belongs to the integrin alpha chain family. (1180 aa)
	LOC103372955	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1056 aa)
	itgav	Integrin, alpha V; Belongs to the integrin alpha chain family. (750 aa)
	itga6	Integrin, alpha 6a; Belongs to the integrin alpha chain family. (1095 aa)
	itgb2	Integrin beta. (824 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (802 aa)
	LOC103361671	VWFA domain-containing protein; Belongs to the integrin alpha chain family. (1130 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	ENSSPAP00000004528	Uncharacterized protein. (143 aa)
	LOC103372831	Elastin microfibril interfacer 1b. (1212 aa)
	itga8	Integrin, alpha 8; Belongs to the integrin alpha chain family. (1055 aa)
	LOC103364929	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	LOC103372823	Integrin, alpha 6b; Belongs to the integrin alpha chain family. (1086 aa)
	tnn	Tenascin N. (1121 aa)
	LOC103373890	Si:dkey-32n7.4; Belongs to the integrin alpha chain family. (1137 aa)
	LOC103372762	Uncharacterized protein. (249 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000004528	ENSSPAP00000018240	ENSSPAP00000004528	ENSSPAP00000018240	Uncharacterized protein.	Uncharacterized protein.	0.651
ENSSPAP00000004528	ENSSPAP00000018988	ENSSPAP00000004528	ENSSPAP00000018988	Uncharacterized protein.	Uncharacterized protein.	0.505
ENSSPAP00000004528	ENSSPAP00000021246	ENSSPAP00000004528	ENSSPAP00000021246	Uncharacterized protein.	Integrin_b_cyt domain-containing protein.	0.836
ENSSPAP00000004528	ENSSPAP00000024618	ENSSPAP00000004528	ENSSPAP00000024618	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.732
ENSSPAP00000004528	LOC103356464	ENSSPAP00000004528	ENSSPAP00000027792	Uncharacterized protein.	Tenascin C.	0.853
ENSSPAP00000004528	LOC103357892	ENSSPAP00000004528	ENSSPAP00000015602	Uncharacterized protein.	Junctional adhesion molecule 3b.	0.499
ENSSPAP00000004528	LOC103361671	ENSSPAP00000004528	ENSSPAP00000007141	Uncharacterized protein.	VWFA domain-containing protein; Belongs to the integrin alpha chain family.	0.511
ENSSPAP00000004528	LOC103362295	ENSSPAP00000004528	ENSSPAP00000013585	Uncharacterized protein.	Vitronectin b.	0.842
ENSSPAP00000004528	LOC103364929	ENSSPAP00000004528	ENSSPAP00000003970	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.732
ENSSPAP00000004528	LOC103365304	ENSSPAP00000004528	ENSSPAP00000026648	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.859
ENSSPAP00000004528	LOC103365860	ENSSPAP00000004528	ENSSPAP00000025365	Uncharacterized protein.	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.	0.505
ENSSPAP00000004528	LOC103366332	ENSSPAP00000004528	ENSSPAP00000014423	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.505
ENSSPAP00000004528	LOC103366491	ENSSPAP00000004528	ENSSPAP00000021080	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.732
ENSSPAP00000004528	LOC103366539	ENSSPAP00000004528	ENSSPAP00000022729	Uncharacterized protein.	VWFA domain-containing protein; Belongs to the integrin alpha chain family.	0.486
ENSSPAP00000004528	LOC103366961	ENSSPAP00000004528	ENSSPAP00000021159	Uncharacterized protein.	Integrin beta.	0.836
ENSSPAP00000004528	LOC103372955	ENSSPAP00000004528	ENSSPAP00000010763	Uncharacterized protein.	Integrin, alpha 3b; Belongs to the integrin alpha chain family.	0.639
ENSSPAP00000004528	LOC103373890	ENSSPAP00000004528	ENSSPAP00000000922	Uncharacterized protein.	Si:dkey-32n7.4; Belongs to the integrin alpha chain family.	0.486
ENSSPAP00000004528	LOC103374965	ENSSPAP00000004528	ENSSPAP00000023698	Uncharacterized protein.	Zmp:0000000846.	0.811
ENSSPAP00000004528	LOC103376046	ENSSPAP00000004528	ENSSPAP00000020644	Uncharacterized protein.	Vitronectin a.	0.842
ENSSPAP00000004528	itga1	ENSSPAP00000004528	ENSSPAP00000015350	Uncharacterized protein.	Integrin, alpha 1; Belongs to the integrin alpha chain family.	0.511