21 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103370178	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (270 aa)
	LOC103371563	E1A binding protein p300 a. (2869 aa)
	lrrk1	Leucine-rich repeat kinase 1. (2006 aa)
	atp6ap1	ATPase H+ transporting accessory protein 1a. (463 aa)
	med1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1827 aa)
	sh2b3	SH2B adaptor protein 3. (749 aa)
	LOC103361614	Tyrosine-protein kinase. (537 aa)
	LOC103361681	ATPase H+ transporting accessory protein 1b. (469 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)
	SRF	Serum response factor. (601 aa)
	ABI1	Abl-interactor 1a. (481 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	LOC103365080	Fam20C domain-containing protein. (560 aa)
	LOC103372356	Tyrosine-protein kinase. (544 aa)
	LOC103361753	FAM20C golgi associated secretory pathway kinase a. (573 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	ENSSPAP00000020709	LRRNT domain-containing protein. (90 aa)
	SRF-2	Serum response factor. (478 aa)
	LOC103354342	Abl-interactor 1b. (491 aa)
	LOC103368772	Glycoprotein IX (platelet). (248 aa)
	ep300	E1A binding protein p300 b. (2872 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI1	LOC103361614	ENSSPAP00000008819	ENSSPAP00000002823	Abl-interactor 1a.	Tyrosine-protein kinase.	0.521
ABI1	LOC103372356	ENSSPAP00000008819	ENSSPAP00000014299	Abl-interactor 1a.	Tyrosine-protein kinase.	0.521
ENSSPAP00000020709	LOC103361614	ENSSPAP00000020709	ENSSPAP00000002823	LRRNT domain-containing protein.	Tyrosine-protein kinase.	0.709
ENSSPAP00000020709	LOC103368772	ENSSPAP00000020709	ENSSPAP00000026163	LRRNT domain-containing protein.	Glycoprotein IX (platelet).	0.952
ENSSPAP00000020709	LOC103372356	ENSSPAP00000020709	ENSSPAP00000014299	LRRNT domain-containing protein.	Tyrosine-protein kinase.	0.709
LOC103354342	LOC103361614	ENSSPAP00000027881	ENSSPAP00000002823	Abl-interactor 1b.	Tyrosine-protein kinase.	0.521
LOC103354342	LOC103372356	ENSSPAP00000027881	ENSSPAP00000014299	Abl-interactor 1b.	Tyrosine-protein kinase.	0.521
LOC103357838	LOC103361614	ENSSPAP00000012523	ENSSPAP00000002823	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.702
LOC103357838	LOC103372356	ENSSPAP00000012523	ENSSPAP00000014299	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.702
LOC103357838	ptpn11	ENSSPAP00000012523	ENSSPAP00000015764	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.899
LOC103361614	ABI1	ENSSPAP00000002823	ENSSPAP00000008819	Tyrosine-protein kinase.	Abl-interactor 1a.	0.521
LOC103361614	ENSSPAP00000020709	ENSSPAP00000002823	ENSSPAP00000020709	Tyrosine-protein kinase.	LRRNT domain-containing protein.	0.709
LOC103361614	LOC103354342	ENSSPAP00000002823	ENSSPAP00000027881	Tyrosine-protein kinase.	Abl-interactor 1b.	0.521
LOC103361614	LOC103357838	ENSSPAP00000002823	ENSSPAP00000012523	Tyrosine-protein kinase.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.702
LOC103361614	LOC103368772	ENSSPAP00000002823	ENSSPAP00000026163	Tyrosine-protein kinase.	Glycoprotein IX (platelet).	0.706
LOC103361614	LOC103372356	ENSSPAP00000002823	ENSSPAP00000014299	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.898
LOC103361614	med1	ENSSPAP00000002823	ENSSPAP00000028174	Tyrosine-protein kinase.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.680
LOC103361614	ptpn11	ENSSPAP00000002823	ENSSPAP00000015764	Tyrosine-protein kinase.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.702
LOC103361614	ptpn6	ENSSPAP00000002823	ENSSPAP00000005164	Tyrosine-protein kinase.	Protein tyrosine phosphatase non-receptor type 6.	0.653
LOC103361614	sh2b3	ENSSPAP00000002823	ENSSPAP00000000421	Tyrosine-protein kinase.	SH2B adaptor protein 3.	0.532