(25 nodes) ncRNA transcription network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snapc5	Small nuclear RNA activating complex, polypeptide 5. (120 aa)
	mars1	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (928 aa)
	LOC103370942	Uncharacterized protein. (606 aa)
	ice2	Interactor of little elongator complex ELL subunit 2. (927 aa)
	polr1e	RNA polymerase I subunit E. (415 aa)
	cavin1	Caveolae associated protein 1a. (422 aa)
	ENSSPAP00000025562	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (684 aa)
	taf1b	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (550 aa)
	LOC103375536	Si:ch211-13k12.2. (599 aa)
	ell	Elongation factor RNA polymerase II. (639 aa)
	LOC103364675	Uncharacterized protein. (625 aa)
	cd3eap	Uncharacterized protein. (326 aa)
	ENSSPAP00000015456	Uncharacterized protein. (382 aa)
	sirt7	Sirtuin 7. (407 aa)
	GTF3C1	General transcription factor IIIC subunit 1. (1774 aa)
	polr1b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
	LOC103359431	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (537 aa)
	ddx11	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (846 aa)
	LOC103368354	Small nuclear RNA activating complex, polypeptide 1b. (347 aa)
	npm3	Nucleophosmin/nucleoplasmin, 3. (162 aa)
	snapc3	Small nuclear RNA activating complex, polypeptide 3. (378 aa)
	LOC103355495	Caveolae associated protein 1b. (468 aa)
	rpap2	RNA polymerase II associated protein 2. (667 aa)
	LOC103367668	Zgc:154006. (524 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000015456	polr1b	ENSSPAP00000015456	ENSSPAP00000008365	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.519
ENSSPAP00000015456	snapc3	ENSSPAP00000015456	ENSSPAP00000002274	Uncharacterized protein.	Small nuclear RNA activating complex, polypeptide 3.	0.985
ENSSPAP00000015456	snapc5	ENSSPAP00000015456	ENSSPAP00000025267	Uncharacterized protein.	Small nuclear RNA activating complex, polypeptide 5.	0.979
ENSSPAP00000025562	LOC103364675	ENSSPAP00000025562	ENSSPAP00000020970	Polymerase (RNA) II (DNA directed) polypeptide L.	Uncharacterized protein.	0.759
ENSSPAP00000025562	LOC103370942	ENSSPAP00000025562	ENSSPAP00000030090	Polymerase (RNA) II (DNA directed) polypeptide L.	Uncharacterized protein.	0.765
ENSSPAP00000025562	LOC103375536	ENSSPAP00000025562	ENSSPAP00000023362	Polymerase (RNA) II (DNA directed) polypeptide L.	Si:ch211-13k12.2.	0.765
ENSSPAP00000025562	cd3eap	ENSSPAP00000025562	ENSSPAP00000019555	Polymerase (RNA) II (DNA directed) polypeptide L.	Uncharacterized protein.	0.992
ENSSPAP00000025562	ddx11	ENSSPAP00000025562	ENSSPAP00000004930	Polymerase (RNA) II (DNA directed) polypeptide L.	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.	0.945
ENSSPAP00000025562	ell	ENSSPAP00000025562	ENSSPAP00000021716	Polymerase (RNA) II (DNA directed) polypeptide L.	Elongation factor RNA polymerase II.	0.765
ENSSPAP00000025562	ell2	ENSSPAP00000025562	ENSSPAP00000024793	Polymerase (RNA) II (DNA directed) polypeptide L.	Elongation factor, RNA polymerase II, 2.	0.765
ENSSPAP00000025562	polr1b	ENSSPAP00000025562	ENSSPAP00000008365	Polymerase (RNA) II (DNA directed) polypeptide L.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ENSSPAP00000025562	polr1e	ENSSPAP00000025562	ENSSPAP00000028215	Polymerase (RNA) II (DNA directed) polypeptide L.	RNA polymerase I subunit E.	0.999
ENSSPAP00000025562	rpap2	ENSSPAP00000025562	ENSSPAP00000001249	Polymerase (RNA) II (DNA directed) polypeptide L.	RNA polymerase II associated protein 2.	0.983
ENSSPAP00000025562	snapc3	ENSSPAP00000025562	ENSSPAP00000002274	Polymerase (RNA) II (DNA directed) polypeptide L.	Small nuclear RNA activating complex, polypeptide 3.	0.921
LOC103359431	LOC103367668	ENSSPAP00000005144	ENSSPAP00000000139	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family.	Zgc:154006.	0.901
LOC103364675	ENSSPAP00000025562	ENSSPAP00000020970	ENSSPAP00000025562	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.759
LOC103364675	LOC103370942	ENSSPAP00000020970	ENSSPAP00000030090	Uncharacterized protein.	Uncharacterized protein.	0.403
LOC103364675	ice2	ENSSPAP00000020970	ENSSPAP00000028542	Uncharacterized protein.	Interactor of little elongator complex ELL subunit 2.	0.851
LOC103364675	polr1b	ENSSPAP00000020970	ENSSPAP00000008365	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.573
LOC103364675	rpap2	ENSSPAP00000020970	ENSSPAP00000001249	Uncharacterized protein.	RNA polymerase II associated protein 2.	0.587