117 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	stx6	Syntaxin 6; Belongs to the syntaxin family. (262 aa)
	LOC103359002	V-SNARE coiled-coil homology domain-containing protein. (95 aa)
	LOC103360075	RAB11 family interacting protein 4 (class II) a. (578 aa)
	rab35	RAB35, member RAS oncogene family b. (201 aa)
	vps52	VPS52 subunit of GARP complex. (724 aa)
	stx10	Syntaxin 10. (242 aa)
	LOC103372938	Si:dkey-76b14.2. (910 aa)
	LOC103366730	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (545 aa)
	LOC103373820	Cysteine-rich hydrophobic domain 1. (185 aa)
	ENSSPAP00000008379	UDENN domain-containing protein. (199 aa)
	LOC103363946	Si:dkey-16l2.16. (209 aa)
	lrrc1	Leucine rich repeat containing 1. (525 aa)
	eipr1	EARP complex and GARP complex interacting protein 1. (387 aa)
	ccdc93	Coiled-coil domain containing 93. (635 aa)
	LOC103375218	Uncharacterized protein. (143 aa)
	LOC103353940	EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (518 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (861 aa)
	LOC103373450	Uncharacterized protein. (215 aa)
	vps51	VPS51 subunit of GARP complex. (834 aa)
	LOC103359881	RAB7a, member RAS oncogene family. (207 aa)
	exoc4	Exocyst complex component 4. (917 aa)
	LOC103363130	RAB15, member RAS oncogene family. (212 aa)
	rab14	RAB14, member RAS oncogene family. (215 aa)
	rab13	Uncharacterized protein. (200 aa)
	SNX27	Sorting nexin 27. (566 aa)
	vps26c	VPS26 endosomal protein sorting factor C. (297 aa)
	LOC103367677	Si:dkey-102f14.5. (418 aa)
	prepl	Prolyl endopeptidase like. (725 aa)
	ARF6	ADP ribosylation factor 6. (123 aa)
	LOC103372776	DENN/MADD domain containing 1A. (837 aa)
	exoc6	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (827 aa)
	LOC103373906	Uncharacterized protein. (174 aa)
	LOC103366613	Uncharacterized protein. (207 aa)
	sys1	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
	rab11fip3	RAB11 family interacting protein 3 (class II). (1014 aa)
	ENSSPAP00000002516	Uncharacterized protein. (192 aa)
	vps39	VPS39 subunit of HOPS complex. (875 aa)
	LOC103361681	ATPase H+ transporting accessory protein 1b. (469 aa)
	LOC103356295	Sorting nexin 27a. (563 aa)
	LOC103354442	Glutamate receptor interacting protein 2a. (863 aa)
	LOC103361951	PX domain-containing protein. (449 aa)
	LOC103356081	Ankyrin repeat domain 50-like. (1401 aa)
	washc1	WAS protein family homolog 1. (474 aa)
	ENSSPAP00000004961	Amnion associated transmembrane protein. (474 aa)
	rab26	Uncharacterized protein. (252 aa)
	exoc8	Exocyst complex component 8. (685 aa)
	grip1	Glutamate receptor interacting protein 1. (1076 aa)
	LOC103354887	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (750 aa)
	LOC103367111	Trafficking regulator of GLUT4 (SLC2A4) 1a. (182 aa)
	atp6ap1	ATPase H+ transporting accessory protein 1a. (463 aa)
	vps35l	VPS35 endosomal protein sorting factor like. (968 aa)
	vps53	VPS53 subunit of GARP complex. (831 aa)
	golga4	Golgin A4. (2084 aa)
	ENSSPAP00000027255	ANK_REP_REGION domain-containing protein. (146 aa)
	stxbp6	Syntaxin binding protein 6 (amisyn). (210 aa)
	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (632 aa)
	ENSSPAP00000026118	BMERB domain-containing protein. (243 aa)
	rab11a	RAB11A, member RAS oncogene family. (203 aa)
	EHD2	EH-domain containing 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (540 aa)
	ENSSPAP00000023507	Si:dkey-245p14.4. (189 aa)
	vps29	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (208 aa)
	LOC103353160	Cysteine-rich hydrophobic domain 2. (170 aa)
	nsf	N-ethylmaleimide-sensitive factor a. (734 aa)
	LOC103370860	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC103355948	Uncharacterized protein. (920 aa)
	LOC103355945	Uncharacterized protein. (664 aa)
	rab8b	Multiple EGF-like-domains 8. (190 aa)
	gripap1	GRIP1 associated protein 1. (733 aa)
	exoc2	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (922 aa)
	RAB8A	RAB8A, member RAS oncogene family. (209 aa)
	rab10	RAB10, member RAS oncogene family. (219 aa)
	blzf1	Basic leucine zipper nuclear factor 1. (415 aa)
	snx7	Sorting nexin 7. (405 aa)
	NSG1	Neuronal vesicle trafficking associated 1. (185 aa)
	rab15	RAB15, member RAS oncogene family. (213 aa)
	ENSSPAP00000019828	RAB10, member RAS oncogene family. (202 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (696 aa)
	LOC103369191	Uncharacterized protein. (218 aa)
	LOC103375457	Uncharacterized protein. (137 aa)
	ENSSPAP00000018959	Uncharacterized protein. (160 aa)
	arfrp1	ADP-ribosylation factor related protein 1. (184 aa)
	snx12	Sorting nexin 12. (182 aa)
	LOC103353060	RAB8A, member RAS oncogene family. (206 aa)
	LOC103362405	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (721 aa)
	LOC103369145	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (535 aa)
	snx3	Sorting nexin 3. (163 aa)
	vps35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (756 aa)
	golph3	Golgi phosphoprotein 3. (323 aa)
	scrib	Scribble planar cell polarity protein. (1689 aa)
	LOC103362356	RAB11a, member RAS oncogene family, like. (216 aa)
	rab11fip4	RAB11 family interacting protein 4 (class II) b. (481 aa)
	LOC103369625	Uncharacterized protein. (622 aa)
	LOC103364537	Uncharacterized protein. (293 aa)
	LOC103369616	Uncharacterized protein. (800 aa)
	LOC103356774	Sorting nexin 4. (438 aa)
	ANKRD50	Ankyrin repeat domain 50. (1426 aa)
	LOC103366835	Uncharacterized protein. (218 aa)
	ENSSPAP00000014533	Uncharacterized protein. (111 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (766 aa)
	snx30	Sorting nexin family member 30. (443 aa)
	LOC103374194	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (177 aa)
	cmtm6	MARVEL domain-containing protein. (189 aa)
	exoc5	Exocyst complex component 5. (708 aa)
	micall2	Mical-like 2a. (756 aa)
	LOC103357845	Glutamate receptor interacting protein 2b. (1067 aa)
	VAMP3	Vesicle associated membrane protein 3. (104 aa)
	ptpn23	Protein tyrosine phosphatase, non-receptor type 23, a. (1960 aa)
	exoc1	Exocyst complex component 1. (883 aa)
	vps50	VPS50 EARP/GARPII complex subunit. (958 aa)
	LOC103367352	N-ethylmaleimide-sensitive factor b. (747 aa)
	bbs1	Bardet-Biedl syndrome 1. (592 aa)
	ENSSPAP00000011653	Uncharacterized protein. (765 aa)
	ENSSPAP00000011594	Uncharacterized protein. (935 aa)
	ENSSPAP00000011529	Si:ch211-233a24.2. (1934 aa)
	ankrd27	Ankyrin repeat domain 27 (VPS9 domain). (1207 aa)
	ENSSPAP00000011456	DENN/MADD domain containing 1A. (219 aa)
	LOC103356238	EH-domain containing 1a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (532 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD50	LOC103354442	ENSSPAP00000015147	ENSSPAP00000003554	Ankyrin repeat domain 50.	Glutamate receptor interacting protein 2a.	0.420
ANKRD50	LOC103357845	ENSSPAP00000015147	ENSSPAP00000012810	Ankyrin repeat domain 50.	Glutamate receptor interacting protein 2b.	0.420
ANKRD50	rabep1	ENSSPAP00000015147	ENSSPAP00000006948	Ankyrin repeat domain 50.	Rabaptin, RAB GTPase binding effector protein 1.	0.529
ANKRD50	vps29	ENSSPAP00000015147	ENSSPAP00000023288	Ankyrin repeat domain 50.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.601
ANKRD50	vps35	ENSSPAP00000015147	ENSSPAP00000016535	Ankyrin repeat domain 50.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.543
ARF6	ENSSPAP00000002516	ENSSPAP00000000376	ENSSPAP00000002516	ADP ribosylation factor 6.	Uncharacterized protein.	0.452
ARF6	ENSSPAP00000018959	ENSSPAP00000000376	ENSSPAP00000018959	ADP ribosylation factor 6.	Uncharacterized protein.	0.447
ARF6	ENSSPAP00000019828	ENSSPAP00000000376	ENSSPAP00000019828	ADP ribosylation factor 6.	RAB10, member RAS oncogene family.	0.447
ARF6	ENSSPAP00000023507	ENSSPAP00000000376	ENSSPAP00000023507	ADP ribosylation factor 6.	Si:dkey-245p14.4.	0.519
ARF6	GGA1	ENSSPAP00000000376	ENSSPAP00000026194	ADP ribosylation factor 6.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.572
ARF6	LOC103353060	ENSSPAP00000000376	ENSSPAP00000018245	ADP ribosylation factor 6.	RAB8A, member RAS oncogene family.	0.447
ARF6	LOC103354887	ENSSPAP00000000376	ENSSPAP00000028504	ADP ribosylation factor 6.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.890
ARF6	LOC103355945	ENSSPAP00000000376	ENSSPAP00000022806	ADP ribosylation factor 6.	Uncharacterized protein.	0.572
ARF6	LOC103359002	ENSSPAP00000000376	ENSSPAP00000011227	ADP ribosylation factor 6.	V-SNARE coiled-coil homology domain-containing protein.	0.459
ARF6	LOC103359881	ENSSPAP00000000376	ENSSPAP00000031133	ADP ribosylation factor 6.	RAB7a, member RAS oncogene family.	0.447
ARF6	LOC103360075	ENSSPAP00000000376	ENSSPAP00000011167	ADP ribosylation factor 6.	RAB11 family interacting protein 4 (class II) a.	0.629
ARF6	LOC103362356	ENSSPAP00000000376	ENSSPAP00000015971	ADP ribosylation factor 6.	RAB11a, member RAS oncogene family, like.	0.407
ARF6	LOC103362405	ENSSPAP00000000376	ENSSPAP00000017985	ADP ribosylation factor 6.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.579
ARF6	LOC103363130	ENSSPAP00000000376	ENSSPAP00000030918	ADP ribosylation factor 6.	RAB15, member RAS oncogene family.	0.447
ARF6	LOC103363946	ENSSPAP00000000376	ENSSPAP00000008261	ADP ribosylation factor 6.	Si:dkey-16l2.16.	0.452