15 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1066 aa)
	LOC103368936	Nanos homolog 2; Belongs to the nanos family. (155 aa)
	LOC103368395	TNRC6-PABC_bdg domain-containing protein. (2144 aa)
	LOC103363970	Zgc:162730. (425 aa)
	nanos3	Nanos homolog 3; Belongs to the nanos family. (216 aa)
	zfp36l2	Zinc finger protein 36, C3H type-like 2. (430 aa)
	zfp36l1	Zinc finger protein 36, C3H type-like 1a. (372 aa)
	LOC103366853	CCR4-NOT transcription complex, subunit 7. (248 aa)
	LOC103364512	Trinucleotide repeat containing adaptor 6C2. (1892 aa)
	tnrc6a	Trinucleotide repeat containing adaptor 6A. (1791 aa)
	LOC103361824	Sb:cb81. (397 aa)
	LOC103361861	Trinucleotide repeat containing adaptor 6C1. (1839 aa)
	cnot1	CCR4-NOT transcription complex, subunit 1. (2333 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (249 aa)
	LOC103368117	Si:dkey-46g23.1. (2066 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT7	LOC103361824	ENSSPAP00000025133	ENSSPAP00000017927	CCR4-NOT transcription complex subunit 7.	Sb:cb81.	0.455
CNOT7	LOC103361861	ENSSPAP00000025133	ENSSPAP00000019853	CCR4-NOT transcription complex subunit 7.	Trinucleotide repeat containing adaptor 6C1.	0.596
CNOT7	LOC103363970	ENSSPAP00000025133	ENSSPAP00000008978	CCR4-NOT transcription complex subunit 7.	Zgc:162730.	0.455
CNOT7	LOC103364512	ENSSPAP00000025133	ENSSPAP00000017308	CCR4-NOT transcription complex subunit 7.	Trinucleotide repeat containing adaptor 6C2.	0.596
CNOT7	LOC103368395	ENSSPAP00000025133	ENSSPAP00000005776	CCR4-NOT transcription complex subunit 7.	TNRC6-PABC_bdg domain-containing protein.	0.425
CNOT7	LOC103368936	ENSSPAP00000025133	ENSSPAP00000005009	CCR4-NOT transcription complex subunit 7.	Nanos homolog 2; Belongs to the nanos family.	0.577
CNOT7	cnot1	ENSSPAP00000025133	ENSSPAP00000024988	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 1.	0.983
CNOT7	tnrc6a	ENSSPAP00000025133	ENSSPAP00000017505	CCR4-NOT transcription complex subunit 7.	Trinucleotide repeat containing adaptor 6A.	0.596
CNOT7	zfp36l1	ENSSPAP00000025133	ENSSPAP00000013700	CCR4-NOT transcription complex subunit 7.	Zinc finger protein 36, C3H type-like 1a.	0.455
CNOT7	zfp36l2	ENSSPAP00000025133	ENSSPAP00000011971	CCR4-NOT transcription complex subunit 7.	Zinc finger protein 36, C3H type-like 2.	0.455
LOC103361824	CNOT7	ENSSPAP00000017927	ENSSPAP00000025133	Sb:cb81.	CCR4-NOT transcription complex subunit 7.	0.455
LOC103361824	LOC103366853	ENSSPAP00000017927	ENSSPAP00000015921	Sb:cb81.	CCR4-NOT transcription complex, subunit 7.	0.455
LOC103361824	cnot1	ENSSPAP00000017927	ENSSPAP00000024988	Sb:cb81.	CCR4-NOT transcription complex, subunit 1.	0.750
LOC103361824	zfp36l1	ENSSPAP00000017927	ENSSPAP00000013700	Sb:cb81.	Zinc finger protein 36, C3H type-like 1a.	0.845
LOC103361824	zfp36l2	ENSSPAP00000017927	ENSSPAP00000011971	Sb:cb81.	Zinc finger protein 36, C3H type-like 2.	0.818
LOC103361861	CNOT7	ENSSPAP00000019853	ENSSPAP00000025133	Trinucleotide repeat containing adaptor 6C1.	CCR4-NOT transcription complex subunit 7.	0.596
LOC103361861	LOC103366853	ENSSPAP00000019853	ENSSPAP00000015921	Trinucleotide repeat containing adaptor 6C1.	CCR4-NOT transcription complex, subunit 7.	0.596
LOC103361861	cnot1	ENSSPAP00000019853	ENSSPAP00000024988	Trinucleotide repeat containing adaptor 6C1.	CCR4-NOT transcription complex, subunit 1.	0.810
LOC103363970	CNOT7	ENSSPAP00000008978	ENSSPAP00000025133	Zgc:162730.	CCR4-NOT transcription complex subunit 7.	0.455
LOC103363970	LOC103366853	ENSSPAP00000008978	ENSSPAP00000015921	Zgc:162730.	CCR4-NOT transcription complex, subunit 7.	0.455