10 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	fmr1	Fragile X mental retardation 1. (612 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	rap1a	Uncharacterized protein. (185 aa)
	cbarp	CACN subunit beta associated regulatory protein b. (899 aa)
	LOC103368175	Uncharacterized protein. (184 aa)
	ENSSPAP00000030694	Uncharacterized protein. (548 aa)
	stxbp3	Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family. (617 aa)
	LOC103354437	RAP1A, member of RAS oncogene family a. (231 aa)
	LOC103375488	Ig-like domain-containing protein; Belongs to the MHC class I family. (396 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103354437	LOC103368175	ENSSPAP00000019043	ENSSPAP00000028612	RAP1A, member of RAS oncogene family a.	Uncharacterized protein.	0.899
LOC103354437	rap1a	ENSSPAP00000019043	ENSSPAP00000019988	RAP1A, member of RAS oncogene family a.	Uncharacterized protein.	0.899
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
LOC103368175	LOC103354437	ENSSPAP00000028612	ENSSPAP00000019043	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.899
LOC103368175	rap1a	ENSSPAP00000028612	ENSSPAP00000019988	Uncharacterized protein.	Uncharacterized protein.	0.898
rabgef1	LOC103357827	ENSSPAP00000001267	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.672
rap1a	LOC103354437	ENSSPAP00000019988	ENSSPAP00000019043	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.899
rap1a	LOC103368175	ENSSPAP00000019988	ENSSPAP00000028612	Uncharacterized protein.	Uncharacterized protein.	0.898