STRINGSTRING
kdm1a kdm1a sirt6 sirt6 ptprc ptprc LOC103356681 LOC103356681 ENSSPAP00000007333 ENSSPAP00000007333 atxn1l atxn1l LOC103362742 LOC103362742 ENSSPAP00000007942 ENSSPAP00000007942 ENSSPAP00000011206 ENSSPAP00000011206 pdcd2 pdcd2 ENSSPAP00000031321 ENSSPAP00000031321 LOC103373263 LOC103373263 fgf4 fgf4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
kdm1aLysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (827 aa)
sirt6Sirtuin 6. (349 aa)
ptprcProtein tyrosine phosphatase receptor type C. (1045 aa)
LOC103356681Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (188 aa)
ENSSPAP00000007333Uncharacterized protein. (69 aa)
atxn1lAtaxin 1-like. (835 aa)
LOC103362742Uncharacterized protein. (120 aa)
ENSSPAP00000007942Uncharacterized protein. (176 aa)
ENSSPAP00000011206High mobility group AT-hook 2. (108 aa)
pdcd2Programmed cell death 2. (366 aa)
ENSSPAP00000031321Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family. (305 aa)
LOC103373263Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
fgf4Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (190 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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