17 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COX7A2	Cytochrome c oxidase subunit 7A2. (85 aa)
	NDUFA4	NDUFA4 mitochondrial complex associated. (82 aa)
	COX5A	Cytochrome c oxidase subunit 5Ab. (141 aa)
	LOC103362772	NDUFA4 mitochondrial complex associated like 2a. (81 aa)
	ENSSPAP00000001906	Cytochrome c oxidase subunit 4I2. (141 aa)
	LOC103360702	Uncharacterized protein. (458 aa)
	LOC103374647	Cytochrome c oxidase subunit 4I1. (169 aa)
	LOC103359921	Cytochrome c oxidase subunit 7C. (106 aa)
	LOC103353613	Cytochrome c oxidase subunit 6A, mitochondrial. (108 aa)
	LOC103358564	NADH:ubiquinone oxidoreductase subunit A4. (85 aa)
	LOC103375935	Uncharacterized protein. (180 aa)
	ENSSPAP00000023860	Uncharacterized protein. (70 aa)
	ENSSPAP00000013187	Uncharacterized protein. (97 aa)
	LOC103373565	Cytochrome c oxidase subunit 7A1. (176 aa)
	LOC103353751	Cytochrome c oxidase subunit 7A2a. (83 aa)
	LOC103353210	Zgc:153317. (93 aa)
	LOC103376114	Ubiquinol-cytochrome c reductase core protein 2b. (459 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX5A	COX7A2	ENSSPAP00000026823	ENSSPAP00000014004	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 7A2.	0.966
COX5A	ENSSPAP00000001906	ENSSPAP00000026823	ENSSPAP00000001906	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 4I2.	0.997
COX5A	ENSSPAP00000013187	ENSSPAP00000026823	ENSSPAP00000013187	Cytochrome c oxidase subunit 5Ab.	Uncharacterized protein.	0.994
COX5A	ENSSPAP00000023860	ENSSPAP00000026823	ENSSPAP00000023860	Cytochrome c oxidase subunit 5Ab.	Uncharacterized protein.	0.972
COX5A	LOC103353613	ENSSPAP00000026823	ENSSPAP00000018888	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.999
COX5A	LOC103353751	ENSSPAP00000026823	ENSSPAP00000025920	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 7A2a.	0.966
COX5A	LOC103358564	ENSSPAP00000026823	ENSSPAP00000019263	Cytochrome c oxidase subunit 5Ab.	NADH:ubiquinone oxidoreductase subunit A4.	0.956
COX5A	LOC103359921	ENSSPAP00000026823	ENSSPAP00000001550	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 7C.	0.999
COX5A	LOC103360702	ENSSPAP00000026823	ENSSPAP00000011519	Cytochrome c oxidase subunit 5Ab.	Uncharacterized protein.	0.995
COX5A	LOC103373565	ENSSPAP00000026823	ENSSPAP00000013714	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 7A1.	0.966
COX5A	LOC103374647	ENSSPAP00000026823	ENSSPAP00000007982	Cytochrome c oxidase subunit 5Ab.	Cytochrome c oxidase subunit 4I1.	0.997
COX5A	LOC103375935	ENSSPAP00000026823	ENSSPAP00000013141	Cytochrome c oxidase subunit 5Ab.	Uncharacterized protein.	0.932
COX5A	LOC103376114	ENSSPAP00000026823	ENSSPAP00000024607	Cytochrome c oxidase subunit 5Ab.	Ubiquinol-cytochrome c reductase core protein 2b.	0.995
COX5A	NDUFA4	ENSSPAP00000026823	ENSSPAP00000017595	Cytochrome c oxidase subunit 5Ab.	NDUFA4 mitochondrial complex associated.	0.935
COX7A2	COX5A	ENSSPAP00000014004	ENSSPAP00000026823	Cytochrome c oxidase subunit 7A2.	Cytochrome c oxidase subunit 5Ab.	0.966
COX7A2	ENSSPAP00000001906	ENSSPAP00000014004	ENSSPAP00000001906	Cytochrome c oxidase subunit 7A2.	Cytochrome c oxidase subunit 4I2.	0.934
COX7A2	ENSSPAP00000013187	ENSSPAP00000014004	ENSSPAP00000013187	Cytochrome c oxidase subunit 7A2.	Uncharacterized protein.	0.921
COX7A2	ENSSPAP00000023860	ENSSPAP00000014004	ENSSPAP00000023860	Cytochrome c oxidase subunit 7A2.	Uncharacterized protein.	0.943
COX7A2	LOC103353613	ENSSPAP00000014004	ENSSPAP00000018888	Cytochrome c oxidase subunit 7A2.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.989
COX7A2	LOC103358564	ENSSPAP00000014004	ENSSPAP00000019263	Cytochrome c oxidase subunit 7A2.	NADH:ubiquinone oxidoreductase subunit A4.	0.923