(23 nodes) 90S preribosome network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nol6	Nucleolar protein 6. (1141 aa)
	noc4l	Nucleolar complex associated 4 homolog. (526 aa)
	hunk	Hormonally up-regulated Neu-associated kinase. (686 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (714 aa)
	fbxw9	F-box and WD repeat domain containing 9. (591 aa)
	utp6	UTP6 small subunit processome component. (600 aa)
	ENSSPAP00000013090	Si:ch211-197l9.5. (298 aa)
	wdr3	WD repeat domain 3. (769 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	cmss1	Cms1 ribosomal small subunit homolog. (322 aa)
	utp18	Uncharacterized protein. (559 aa)
	rsl24d1	Ribosomal L24 domain containing 1. (164 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
	fbxw12	Si:ch73-142c19.1. (469 aa)
	pes1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (587 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (282 aa)
	utp20	UTP20 small subunit processome component. (2751 aa)
	nsa2	NSA2 ribosome biogenesis factor. (260 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (662 aa)
	noc2l	Uncharacterized protein. (762 aa)
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (874 aa)
	LOC103374053	NSA2 ribosome biogenesis homolog (S. cerevisiae). (260 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103374053	bop1	ENSSPAP00000006704	ENSSPAP00000018459	NSA2 ribosome biogenesis homolog (S. cerevisiae).	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.971
LOC103374053	imp3	ENSSPAP00000006704	ENSSPAP00000002726	NSA2 ribosome biogenesis homolog (S. cerevisiae).	IMP U3 small nucleolar ribonucleoprotein 3.	0.969
LOC103374053	imp4	ENSSPAP00000006704	ENSSPAP00000027983	NSA2 ribosome biogenesis homolog (S. cerevisiae).	IMP U3 small nucleolar ribonucleoprotein 4.	0.743
LOC103374053	noc2l	ENSSPAP00000006704	ENSSPAP00000016001	NSA2 ribosome biogenesis homolog (S. cerevisiae).	Uncharacterized protein.	0.967
LOC103374053	noc4l	ENSSPAP00000006704	ENSSPAP00000008592	NSA2 ribosome biogenesis homolog (S. cerevisiae).	Nucleolar complex associated 4 homolog.	0.406
LOC103374053	nop14	ENSSPAP00000006704	ENSSPAP00000004534	NSA2 ribosome biogenesis homolog (S. cerevisiae).	NOP14 nucleolar protein homolog (yeast).	0.687
LOC103374053	pes1	ENSSPAP00000006704	ENSSPAP00000025104	NSA2 ribosome biogenesis homolog (S. cerevisiae).	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.993
LOC103374053	rsl24d1	ENSSPAP00000006704	ENSSPAP00000030830	NSA2 ribosome biogenesis homolog (S. cerevisiae).	Ribosomal L24 domain containing 1.	0.994
LOC103374053	utp6	ENSSPAP00000006704	ENSSPAP00000015793	NSA2 ribosome biogenesis homolog (S. cerevisiae).	UTP6 small subunit processome component.	0.620
LOC103374053	wdr12	ENSSPAP00000006704	ENSSPAP00000030089	NSA2 ribosome biogenesis homolog (S. cerevisiae).	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.985
LOC103374053	wdr3	ENSSPAP00000006704	ENSSPAP00000000294	NSA2 ribosome biogenesis homolog (S. cerevisiae).	WD repeat domain 3.	0.426
bop1	LOC103374053	ENSSPAP00000018459	ENSSPAP00000006704	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.971
bop1	imp3	ENSSPAP00000018459	ENSSPAP00000002726	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IMP U3 small nucleolar ribonucleoprotein 3.	0.698
bop1	imp4	ENSSPAP00000018459	ENSSPAP00000027983	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IMP U3 small nucleolar ribonucleoprotein 4.	0.866
bop1	mphosph10	ENSSPAP00000018459	ENSSPAP00000010007	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.836
bop1	noc2l	ENSSPAP00000018459	ENSSPAP00000016001	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.994
bop1	noc4l	ENSSPAP00000018459	ENSSPAP00000008592	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar complex associated 4 homolog.	0.873
bop1	nol6	ENSSPAP00000018459	ENSSPAP00000007226	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar protein 6.	0.882
bop1	nop14	ENSSPAP00000018459	ENSSPAP00000004534	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP14 nucleolar protein homolog (yeast).	0.891
bop1	nsa2	ENSSPAP00000018459	ENSSPAP00000018731	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NSA2 ribosome biogenesis factor.	0.971