13 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wdr41	WD repeat domain 41. (449 aa)
	lamtor3	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3. (138 aa)
	elmo1	Engulfment and cell motility 1. (684 aa)
	ENSSPAP00000021207	Ig-like domain-containing protein. (299 aa)
	rgp1	GP1 homolog, RAB6A GEF complex partner 1. (395 aa)
	elmo2	Engulfment and cell motility 2. (711 aa)
	RIC1	RIC1 homolog, RAB6A GEF complex partner 1. (1441 aa)
	smcr8	Smith-Magenis syndrome chromosome region, candidate 8a. (849 aa)
	LOC103365098	Smith-Magenis syndrome chromosome region, candidate 8b. (905 aa)
	ENSSPAP00000014841	Uncharacterized protein. (876 aa)
	ENSSPAP00000014871	Uncharacterized protein. (117 aa)
	lamtor2	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2. (125 aa)
	lamtor4	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4. (96 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000014841	ENSSPAP00000014871	ENSSPAP00000014841	ENSSPAP00000014871	Uncharacterized protein.	Uncharacterized protein.	0.896
ENSSPAP00000014871	ENSSPAP00000014841	ENSSPAP00000014871	ENSSPAP00000014841	Uncharacterized protein.	Uncharacterized protein.	0.896
LOC103365098	smcr8	ENSSPAP00000014602	ENSSPAP00000007968	Smith-Magenis syndrome chromosome region, candidate 8b.	Smith-Magenis syndrome chromosome region, candidate 8a.	0.905
LOC103365098	wdr41	ENSSPAP00000014602	ENSSPAP00000025089	Smith-Magenis syndrome chromosome region, candidate 8b.	WD repeat domain 41.	0.989
RIC1	rgp1	ENSSPAP00000030617	ENSSPAP00000024305	RIC1 homolog, RAB6A GEF complex partner 1.	GP1 homolog, RAB6A GEF complex partner 1.	0.998
lamtor2	lamtor3	ENSSPAP00000016011	ENSSPAP00000024490	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
lamtor2	lamtor4	ENSSPAP00000016011	ENSSPAP00000019165	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
lamtor3	lamtor2	ENSSPAP00000024490	ENSSPAP00000016011	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
lamtor3	lamtor4	ENSSPAP00000024490	ENSSPAP00000019165	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.960
lamtor4	lamtor2	ENSSPAP00000019165	ENSSPAP00000016011	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
lamtor4	lamtor3	ENSSPAP00000019165	ENSSPAP00000024490	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.960
rgp1	RIC1	ENSSPAP00000024305	ENSSPAP00000030617	GP1 homolog, RAB6A GEF complex partner 1.	RIC1 homolog, RAB6A GEF complex partner 1.	0.998
smcr8	LOC103365098	ENSSPAP00000007968	ENSSPAP00000014602	Smith-Magenis syndrome chromosome region, candidate 8a.	Smith-Magenis syndrome chromosome region, candidate 8b.	0.905
smcr8	wdr41	ENSSPAP00000007968	ENSSPAP00000025089	Smith-Magenis syndrome chromosome region, candidate 8a.	WD repeat domain 41.	0.989
wdr41	LOC103365098	ENSSPAP00000025089	ENSSPAP00000014602	WD repeat domain 41.	Smith-Magenis syndrome chromosome region, candidate 8b.	0.989
wdr41	smcr8	ENSSPAP00000025089	ENSSPAP00000007968	WD repeat domain 41.	Smith-Magenis syndrome chromosome region, candidate 8a.	0.989