(16 nodes) Interphotoreceptor matrix network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000010134	Uncharacterized protein. (262 aa)
	ENSSPAP00000000467	Interphotoreceptor matrix proteoglycan 2b. (1055 aa)
	ENSSPAP00000006833	Versican a. (361 aa)
	ENSSPAP00000008121	Interphotoreceptor matrix proteoglycan 2a. (233 aa)
	ENSSPAP00000008131	Uncharacterized protein. (117 aa)
	LOC103357150	ULP_PROTEASE domain-containing protein. (1020 aa)
	ENSSPAP00000030780	Uncharacterized protein. (308 aa)
	ENSSPAP00000030772	Uncharacterized protein. (337 aa)
	ENSSPAP00000025518	C-type lectin domain-containing protein. (81 aa)
	ENSSPAP00000025505	Uncharacterized protein. (341 aa)
	ENSSPAP00000025171	Uncharacterized protein. (136 aa)
	ENSSPAP00000023648	Interphotoreceptor retinoid-binding protein like. (915 aa)
	rbp3	Retinol binding protein 3. (617 aa)
	LOC103369211	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (209 aa)
	LOC103374223	Retinol binding protein 4, like; Belongs to the calycin superfamily. Lipocalin family. (196 aa)
	ENSSPAP00000010197	Uncharacterized protein. (198 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000006833	ENSSPAP00000030780	ENSSPAP00000006833	ENSSPAP00000030780	Versican a.	Uncharacterized protein.	0.899
ENSSPAP00000010134	ENSSPAP00000010197	ENSSPAP00000010134	ENSSPAP00000010197	Uncharacterized protein.	Uncharacterized protein.	0.852
ENSSPAP00000010197	ENSSPAP00000010134	ENSSPAP00000010197	ENSSPAP00000010134	Uncharacterized protein.	Uncharacterized protein.	0.852
ENSSPAP00000023648	ENSSPAP00000025171	ENSSPAP00000023648	ENSSPAP00000025171	Interphotoreceptor retinoid-binding protein like.	Uncharacterized protein.	0.514
ENSSPAP00000025171	ENSSPAP00000023648	ENSSPAP00000025171	ENSSPAP00000023648	Uncharacterized protein.	Interphotoreceptor retinoid-binding protein like.	0.514
ENSSPAP00000025171	rbp3	ENSSPAP00000025171	ENSSPAP00000023636	Uncharacterized protein.	Retinol binding protein 3.	0.514
ENSSPAP00000025505	ENSSPAP00000030780	ENSSPAP00000025505	ENSSPAP00000030780	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSSPAP00000030772	ENSSPAP00000030780	ENSSPAP00000030772	ENSSPAP00000030780	Uncharacterized protein.	Uncharacterized protein.	0.890
ENSSPAP00000030780	ENSSPAP00000006833	ENSSPAP00000030780	ENSSPAP00000006833	Uncharacterized protein.	Versican a.	0.899
ENSSPAP00000030780	ENSSPAP00000025505	ENSSPAP00000030780	ENSSPAP00000025505	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSSPAP00000030780	ENSSPAP00000030772	ENSSPAP00000030780	ENSSPAP00000030772	Uncharacterized protein.	Uncharacterized protein.	0.890
rbp3	ENSSPAP00000025171	ENSSPAP00000023636	ENSSPAP00000025171	Retinol binding protein 3.	Uncharacterized protein.	0.514