(18 nodes) Very-low-density lipoprotein particle network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000030443	Vitellogenin domain-containing protein. (2395 aa)
	LOC103371606	Apolipoprotein Ba. (4357 aa)
	pcyox1	Prenylcysteine oxidase 1. (509 aa)
	ENSSPAP00000030547	Uncharacterized protein. (414 aa)
	ENSSPAP00000030537	Vitellogenin domain-containing protein. (772 aa)
	ENSSPAP00000030517	Vitellogenin domain-containing protein. (2328 aa)
	LOC103365214	PLAT domain-containing protein. (509 aa)
	LOC103365212	Lipoprotein lipase; Key enzyme in triglyceride metabolism. Catalyzes the hydrolysis of triglycerides from circulating chylomicrons and very low density lipoproteins (VLDL), and thereby plays an important role in lipid clearance from the blood stream, lipid utilization and storage. Mediates margination of triglyceride-rich lipoprotein particles in capillaries. Recruited to its site of action on the luminal surface of vascular endothelium by binding to GPIHBP1 and cell surface heparan sulfate proteoglycans. (515 aa)
	LOC103365207	Scaffold attachment factor B. (751 aa)
	ENSSPAP00000017462	Uncharacterized protein. (78 aa)
	apom	Uncharacterized protein. (190 aa)
	LOC103353863	Low density lipoprotein receptor b. (875 aa)
	LOC103355569	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor. (969 aa)
	lrp8	Uncharacterized protein. (870 aa)
	ldlr	Low density lipoprotein receptor a. (830 aa)
	sh3bp2	SH3-domain binding protein 2. (611 aa)
	vldlr	Very low density lipoprotein receptor. (833 aa)
	pcyox1l	Prenylcysteine oxidase 1 like. (404 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000017462	ENSSPAP00000030443	ENSSPAP00000017462	ENSSPAP00000030443	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.557
ENSSPAP00000017462	ENSSPAP00000030517	ENSSPAP00000017462	ENSSPAP00000030517	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.557
ENSSPAP00000017462	ENSSPAP00000030537	ENSSPAP00000017462	ENSSPAP00000030537	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.557
ENSSPAP00000017462	ENSSPAP00000030547	ENSSPAP00000017462	ENSSPAP00000030547	Uncharacterized protein.	Uncharacterized protein.	0.557
ENSSPAP00000017462	LOC103371606	ENSSPAP00000017462	ENSSPAP00000030931	Uncharacterized protein.	Apolipoprotein Ba.	0.557
ENSSPAP00000017462	apom	ENSSPAP00000017462	ENSSPAP00000016747	Uncharacterized protein.	Uncharacterized protein.	0.437
ENSSPAP00000030443	ENSSPAP00000017462	ENSSPAP00000030443	ENSSPAP00000017462	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.557
ENSSPAP00000030443	ENSSPAP00000030547	ENSSPAP00000030443	ENSSPAP00000030547	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.464
ENSSPAP00000030443	LOC103353863	ENSSPAP00000030443	ENSSPAP00000016554	Vitellogenin domain-containing protein.	Low density lipoprotein receptor b.	0.605
ENSSPAP00000030443	LOC103355569	ENSSPAP00000030443	ENSSPAP00000006620	Vitellogenin domain-containing protein.	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.	0.605
ENSSPAP00000030443	ldlr	ENSSPAP00000030443	ENSSPAP00000005440	Vitellogenin domain-containing protein.	Low density lipoprotein receptor a.	0.605
ENSSPAP00000030443	lrp8	ENSSPAP00000030443	ENSSPAP00000005976	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.605
ENSSPAP00000030443	vldlr	ENSSPAP00000030443	ENSSPAP00000005258	Vitellogenin domain-containing protein.	Very low density lipoprotein receptor.	0.605
ENSSPAP00000030517	ENSSPAP00000017462	ENSSPAP00000030517	ENSSPAP00000017462	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.557
ENSSPAP00000030517	LOC103353863	ENSSPAP00000030517	ENSSPAP00000016554	Vitellogenin domain-containing protein.	Low density lipoprotein receptor b.	0.605
ENSSPAP00000030517	LOC103355569	ENSSPAP00000030517	ENSSPAP00000006620	Vitellogenin domain-containing protein.	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.	0.605
ENSSPAP00000030517	ldlr	ENSSPAP00000030517	ENSSPAP00000005440	Vitellogenin domain-containing protein.	Low density lipoprotein receptor a.	0.605
ENSSPAP00000030517	lrp8	ENSSPAP00000030517	ENSSPAP00000005976	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.605
ENSSPAP00000030517	vldlr	ENSSPAP00000030517	ENSSPAP00000005258	Vitellogenin domain-containing protein.	Very low density lipoprotein receptor.	0.605
ENSSPAP00000030537	ENSSPAP00000017462	ENSSPAP00000030537	ENSSPAP00000017462	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.557