STRINGSTRING
pum2 pum2 atxn2 atxn2 lgalsl lgalsl nrde2 nrde2 LOC103366028 LOC103366028 uhmk1 uhmk1 ythdf3 ythdf3 LOC103373921 LOC103373921 LOC103357173 LOC103357173 gde1 gde1 mcrip2 mcrip2 LOC103356046 LOC103356046 ENSSPAP00000003645 ENSSPAP00000003645 kiaa0355 kiaa0355 patl1 patl1 YTHDF1 YTHDF1 LOC103368936 LOC103368936 larp1 larp1 LOC103368395 LOC103368395 LOC103363883 LOC103363883 ENSSPAP00000006210 ENSSPAP00000006210 patl2 patl2 rc3h2 rc3h2 fmr1 fmr1 tdrd5 tdrd5 dcp1a dcp1a tdrkh tdrkh ENSSPAP00000008874 ENSSPAP00000008874 LOC103353462 LOC103353462 LOC103371840 LOC103371840 nanos3 nanos3 ajuba ajuba ENSSPAP00000011693 ENSSPAP00000011693 asz1 asz1 habp4 habp4 pabpc4 pabpc4 LOC103356754 LOC103356754 g3bp2 g3bp2 LOC103355155 LOC103355155 LOC103375937 LOC103375937 ENSSPAP00000013290 ENSSPAP00000013290 ENSSPAP00000013323 ENSSPAP00000013323 BTBD1 BTBD1 henmt1 henmt1 ALYREF ALYREF mcrip1 mcrip1 ppp1r27 ppp1r27 LOC103375319 LOC103375319 LOC103369104 LOC103369104 trim71 trim71 mex3b mex3b ENSSPAP00000015968 ENSSPAP00000015968 zfand1 zfand1 zc3h12a zc3h12a LOC103354115 LOC103354115 tdrd9 tdrd9 LOC103360817 LOC103360817 ENSSPAP00000017486 ENSSPAP00000017486 piwil1 piwil1 elavl1 elavl1 LOC103360126 LOC103360126 g3bp1 g3bp1 ENSSPAP00000019064 ENSSPAP00000019064 rc3h1 rc3h1 LOC103364803 LOC103364803 ENDOV ENDOV ENSSPAP00000019704 ENSSPAP00000019704 LOC103354577 LOC103354577 pqbp1 pqbp1 LOC103374913 LOC103374913 ENSSPAP00000021266 ENSSPAP00000021266 eif2s1 eif2s1 LOC103367519 LOC103367519 ENSSPAP00000021979 ENSSPAP00000021979 pum1 pum1 edc4 edc4 ythdf2 ythdf2 LOC103373754 LOC103373754 EIF4ENIF1 EIF4ENIF1 LOC103354752 LOC103354752 ENSSPAP00000024161 ENSSPAP00000024161 LOC103360971 LOC103360971 ENSSPAP00000024905 ENSSPAP00000024905 tdrd1 tdrd1 LOC103367053 LOC103367053 LOC103371419 LOC103371419 LOC103358711 LOC103358711 LOC103358713 LOC103358713 ago2 ago2 LOC103368117 LOC103368117 piwil2 piwil2 LOC103376164 LOC103376164 edc3 edc3 pnrc2 pnrc2 ybx1 ybx1 LOC103374411 LOC103374411 LOC103365891 LOC103365891 dis3l2 dis3l2 LOC103363773 LOC103363773 mov10l1 mov10l1 dhx36 dhx36 pnrc1 pnrc1 zc3h12b zc3h12b wtip wtip zc3h12d zc3h12d AGO4 AGO4 ddx6 ddx6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pum2Pumilio RNA-binding family member 2. (1213 aa)
atxn2Ataxin 2. (1081 aa)
lgalslGalectin. (181 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1055 aa)
LOC103366028DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (604 aa)
uhmk1U2AF homology motif (UHM) kinase 1. (450 aa)
ythdf3YTH N(6)-methyladenosine RNA binding protein 3. (606 aa)
LOC103373921DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (484 aa)
LOC103357173C3H1-type domain-containing protein. (915 aa)
gde1Glycerophosphodiester phosphodiesterase 1. (334 aa)
mcrip2Si:dkey-44g23.5. (145 aa)
LOC103356046Mov10 RISC complex RNA helicase a. (999 aa)
ENSSPAP00000003645Si:dkeyp-93d12.1. (1772 aa)
kiaa0355Si:ch211-79l17.1. (1116 aa)
patl1PAT1 homolog 1, processing body mRNA decay factor. (752 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (618 aa)
LOC103368936Nanos homolog 2; Belongs to the nanos family. (155 aa)
larp1La ribonucleoprotein domain family, member 1. (1106 aa)
LOC103368395TNRC6-PABC_bdg domain-containing protein. (2144 aa)
LOC103363883RNA binding protein, mRNA processing factor. (165 aa)
ENSSPAP00000006210Uncharacterized protein. (109 aa)
patl2PAT1 homolog 2. (625 aa)
rc3h2Ring finger and CCCH-type domains 2. (1156 aa)
fmr1Fragile X mental retardation 1. (612 aa)
tdrd5Uncharacterized protein. (812 aa)
dcp1aDecapping mRNA 1A. (506 aa)
tdrkhTudor and KH domain containing. (589 aa)
ENSSPAP00000008874Uncharacterized protein. (119 aa)
LOC103353462DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (597 aa)
LOC103371840LsmAD domain-containing protein. (1058 aa)
nanos3Nanos homolog 3; Belongs to the nanos family. (216 aa)
ajubaAjuba LIM protein. (730 aa)
ENSSPAP00000011693Uncharacterized protein. (622 aa)
asz1Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (386 aa)
habp4HABP4_PAI-RBP1 domain-containing protein. (370 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
LOC103356754C3H1-type domain-containing protein. (973 aa)
g3bp2Zgc:56304. (507 aa)
LOC103355155Uncharacterized protein. (562 aa)
LOC103375937Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
ENSSPAP00000013290Uncharacterized protein. (116 aa)
ENSSPAP000000133232-oxoglutarate and iron-dependent oxygenase domain containing 1. (436 aa)
BTBD1BTB domain containing 1. (488 aa)
henmt1HEN methyltransferase 1. (401 aa)
ALYREFAly/REF export factor. (281 aa)
mcrip1MAPK regulated corepressor interacting protein 1. (98 aa)
ppp1r27ANK_REP_REGION domain-containing protein. (235 aa)
LOC103375319Platelet/endothelial cell adhesion molecule 1. (789 aa)
LOC103369104ELAV-like protein; Belongs to the RRM elav family. (359 aa)
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (831 aa)
mex3bMex-3 RNA binding family member B. (542 aa)
ENSSPAP00000015968RING-type domain-containing protein. (522 aa)
zfand1Zinc finger, AN1-type domain 1. (269 aa)
zc3h12aZinc finger CCCH-type containing 12A. (621 aa)
LOC103354115Lin-28 homolog A. (202 aa)
tdrd9Tudor domain containing 9. (1294 aa)
LOC103360817Argonaute RISC component 4. (252 aa)
ENSSPAP00000017486Tudor domain containing 6. (1664 aa)
piwil1Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family. (808 aa)
elavl1ELAV-like protein; Belongs to the RRM elav family. (348 aa)
LOC103360126Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
g3bp1GTPase activating protein (SH3 domain) binding protein 1. (496 aa)
ENSSPAP00000019064DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family. (398 aa)
rc3h1Ring finger and CCCH-type domains 1b. (1136 aa)
LOC103364803Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
ENDOVEndonuclease V. (252 aa)
ENSSPAP00000019704Decapping mRNA 2. (248 aa)
LOC103354577YTH N(6)-methyladenosine RNA binding protein 1. (623 aa)
pqbp1Polyglutamine binding protein 1. (273 aa)
LOC103374913Ataxin 2-like. (979 aa)
ENSSPAP00000021266Uncharacterized protein. (156 aa)
eif2s1Eukaryotic translation initiation factor 2, subunit 1 alpha b. (315 aa)
LOC103367519Protein phosphatase 1, regulatory subunit 27b. (162 aa)
ENSSPAP00000021979Si:dkey-237i9.8. (611 aa)
pum1Pumilio RNA-binding family member 1. (1163 aa)
edc4Enhancer of mRNA decapping 4. (1390 aa)
ythdf2YTH N(6)-methyladenosine RNA binding protein 2. (638 aa)
LOC103373754Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (557 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (960 aa)
LOC103354752La ribonucleoprotein domain family, member 1B. (1112 aa)
ENSSPAP00000024161HTH La-type RNA-binding domain-containing protein. (223 aa)
LOC103360971Moloney leukemia virus 10b, tandem duplicate 1. (999 aa)
ENSSPAP00000024905Tudor domain-containing protein. (124 aa)
tdrd1Tudor domain containing 1. (1132 aa)
LOC103367053Argonaute RISC component 1; Belongs to the argonaute family. (858 aa)
LOC103371419Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
LOC103358711Uncharacterized protein. (146 aa)
LOC103358713GP-PDE domain-containing protein. (331 aa)
ago2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (875 aa)
LOC103368117Si:dkey-46g23.1. (2066 aa)
piwil2Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (886 aa)
LOC103376164BTB (POZ) domain containing 2b. (575 aa)
edc3Enhancer of mRNA decapping 3. (474 aa)
pnrc2Proline-rich nuclear receptor coactivator 2. (159 aa)
ybx1Y box binding protein 1. (324 aa)
LOC103374411Si:dkey-206d17.12. (601 aa)
LOC103365891DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (755 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1052 aa)
LOC103363773CCHC-type zinc finger, nucleic acid binding protein b. (138 aa)
mov10l1Uncharacterized protein. (1069 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1066 aa)
pnrc1Uncharacterized protein. (269 aa)
zc3h12bZinc finger CCCH-type containing 12B. (845 aa)
wtipUncharacterized protein. (616 aa)
zc3h12dC3H1-type domain-containing protein. (589 aa)
AGO4Argonaute RISC component 4. (442 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (482 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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