(15 nodes) GPCR, family 3, metabotropic glutamate receptor network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103355290	G_PROTEIN_RECEP_F3_4 domain-containing protein. (917 aa)
	LOC103365912	Glutamate receptor, metabotropic 6b. (900 aa)
	grm5	Glutamate receptor, metabotropic 5b. (1194 aa)
	LOC103360334	Glutamate receptor, metabotropic 2b. (874 aa)
	grm8	G_PROTEIN_RECEP_F3_4 domain-containing protein. (885 aa)
	grm1	Glutamate receptor, metabotropic 1b. (1041 aa)
	grm3	Glutamate receptor, metabotropic 3. (863 aa)
	LOC103374715	G_PROTEIN_RECEP_F3_4 domain-containing protein. (493 aa)
	LOC103370677	Glutamate receptor, metabotropic 1a. (1165 aa)
	LOC103368479	Glutamate receptor, metabotropic 2a. (893 aa)
	LOC103354487	Glutamate receptor, metabotropic 5a. (897 aa)
	LOC103364933	Glutamate receptor, metabotropic 8b. (896 aa)
	LOC103354449	G_PROTEIN_RECEP_F3_4 domain-containing protein. (736 aa)
	GRM7	Glutamate metabotropic receptor 7. (922 aa)
	grm4	Glutamate receptor, metabotropic 4. (921 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GRM7	LOC103354487	ENSSPAP00000003850	ENSSPAP00000008356	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 5a.	0.509
GRM7	LOC103360334	ENSSPAP00000003850	ENSSPAP00000025915	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 2b.	0.687
GRM7	LOC103368479	ENSSPAP00000003850	ENSSPAP00000009565	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 2a.	0.687
GRM7	LOC103370677	ENSSPAP00000003850	ENSSPAP00000010004	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 1a.	0.509
GRM7	grm1	ENSSPAP00000003850	ENSSPAP00000021215	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 1b.	0.507
GRM7	grm3	ENSSPAP00000003850	ENSSPAP00000019102	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 3.	0.687
GRM7	grm5	ENSSPAP00000003850	ENSSPAP00000027467	Glutamate metabotropic receptor 7.	Glutamate receptor, metabotropic 5b.	0.505
LOC103354449	LOC103354487	ENSSPAP00000004031	ENSSPAP00000008356	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 5a.	0.505
LOC103354449	LOC103360334	ENSSPAP00000004031	ENSSPAP00000025915	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 2b.	0.689
LOC103354449	LOC103368479	ENSSPAP00000004031	ENSSPAP00000009565	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 2a.	0.688
LOC103354449	LOC103370677	ENSSPAP00000004031	ENSSPAP00000010004	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 1a.	0.503
LOC103354449	grm1	ENSSPAP00000004031	ENSSPAP00000021215	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 1b.	0.500
LOC103354449	grm3	ENSSPAP00000004031	ENSSPAP00000019102	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 3.	0.688
LOC103354449	grm5	ENSSPAP00000004031	ENSSPAP00000027467	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Glutamate receptor, metabotropic 5b.	0.500
LOC103354487	GRM7	ENSSPAP00000008356	ENSSPAP00000003850	Glutamate receptor, metabotropic 5a.	Glutamate metabotropic receptor 7.	0.509
LOC103354487	LOC103354449	ENSSPAP00000008356	ENSSPAP00000004031	Glutamate receptor, metabotropic 5a.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.505
LOC103354487	LOC103355290	ENSSPAP00000008356	ENSSPAP00000000140	Glutamate receptor, metabotropic 5a.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.504
LOC103354487	LOC103360334	ENSSPAP00000008356	ENSSPAP00000025915	Glutamate receptor, metabotropic 5a.	Glutamate receptor, metabotropic 2b.	0.516
LOC103354487	LOC103364933	ENSSPAP00000008356	ENSSPAP00000004126	Glutamate receptor, metabotropic 5a.	Glutamate receptor, metabotropic 8b.	0.508
LOC103354487	LOC103365912	ENSSPAP00000008356	ENSSPAP00000028755	Glutamate receptor, metabotropic 5a.	Glutamate receptor, metabotropic 6b.	0.509