11 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103362637	Zinc finger, AN1-type domain 5b. (230 aa)
	LOC103358789	Zgc:77486. (218 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	zfand5	Zinc finger, AN1-type domain 5a. (208 aa)
	LOC103366651	Uncharacterized protein. (470 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	otud7b	OTU deubiquitinase 7B. (923 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (826 aa)
	otud7a	OTU deubiquitinase 7A. (958 aa)
	LOC103362517	Uncharacterized protein. (252 aa)
	ZFAND3	Zinc finger AN1-type containing 3. (230 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103357827	LOC103366651	ENSSPAP00000012078	ENSSPAP00000004437	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.685
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
LOC103366651	LOC103357827	ENSSPAP00000004437	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.685
LOC103366651	rabgef1	ENSSPAP00000004437	ENSSPAP00000001267	Uncharacterized protein.	Uncharacterized protein.	0.683
otud7a	tnfaip3	ENSSPAP00000022215	ENSSPAP00000018303	OTU deubiquitinase 7A.	Tumor necrosis factor, alpha-induced protein 3.	0.552
otud7b	tnfaip3	ENSSPAP00000016192	ENSSPAP00000018303	OTU deubiquitinase 7B.	Tumor necrosis factor, alpha-induced protein 3.	0.553
rabgef1	LOC103357827	ENSSPAP00000001267	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.672
rabgef1	LOC103366651	ENSSPAP00000001267	ENSSPAP00000004437	Uncharacterized protein.	Uncharacterized protein.	0.683
tnfaip3	otud7a	ENSSPAP00000018303	ENSSPAP00000022215	Tumor necrosis factor, alpha-induced protein 3.	OTU deubiquitinase 7A.	0.552
tnfaip3	otud7b	ENSSPAP00000018303	ENSSPAP00000016192	Tumor necrosis factor, alpha-induced protein 3.	OTU deubiquitinase 7B.	0.553