(37 nodes) Small GTPase Rho network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDC42	Cell division cycle 42. (191 aa)
	LOC103364924	Rho family GTPase 2. (230 aa)
	LOC103362809	Uncharacterized protein. (193 aa)
	rhot2	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (618 aa)
	rac2	Uncharacterized protein. (192 aa)
	LOC103358261	Rho family GTPase 1b. (232 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	rac3	Rac family small GTPase 3b. (192 aa)
	rhof	Ras homolog family member F. (210 aa)
	LOC103356330	Ras homolog family member Ub. (247 aa)
	LOC103372064	Cell division cycle 42. (191 aa)
	RND1	Rho family GTPase 1. (232 aa)
	LOC103356055	Ras homolog family member Ca. (193 aa)
	LOC103373769	Uncharacterized protein. (110 aa)
	LOC103360972	Uncharacterized protein. (193 aa)
	LOC103376111	Uncharacterized protein. (192 aa)
	LOC103368749	Rho family GTPase 2. (234 aa)
	ENSSPAP00000027029	Ras homolog family member H. (196 aa)
	LOC103367639	Uncharacterized protein. (193 aa)
	LOC103370959	Ras homolog family member Q. (207 aa)
	RHOB	Ras homolog family member B. (141 aa)
	ENSSPAP00000030965	Uncharacterized protein. (218 aa)
	LOC103356837	Uncharacterized protein. (191 aa)
	rhou	Uncharacterized protein. (274 aa)
	LOC103357909	Uncharacterized protein. (193 aa)
	RHOF	Ras homolog family member F, filopodia associated. (211 aa)
	LOC103354640	Ras homolog family member Gb. (190 aa)
	rhobtb2	Rho related BTB domain containing 2a. (721 aa)
	LOC103373013	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (660 aa)
	ENSSPAP00000013389	Ras homolog gene family, member Gd. (124 aa)
	ENSSPAP00000012999	Uncharacterized protein. (271 aa)
	RAC1	Rac family small GTPase 1. (192 aa)
	ENSSPAP00000006504	Uncharacterized protein. (146 aa)
	LOC103362416	Rho related BTB domain containing 4. (734 aa)
	LOC103374076	Uncharacterized protein. (200 aa)
	rhov	Ras homolog family member V. (236 aa)
	rhot1	Ras homolog family member T1a. (572 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSSPAP00000013389	ENSSPAP00000022477	ENSSPAP00000013389	Cell division cycle 42.	Ras homolog gene family, member Gd.	0.649
CDC42	ENSSPAP00000027029	ENSSPAP00000022477	ENSSPAP00000027029	Cell division cycle 42.	Ras homolog family member H.	0.672
CDC42	LOC103354640	ENSSPAP00000022477	ENSSPAP00000015203	Cell division cycle 42.	Ras homolog family member Gb.	0.655
CDC42	LOC103356055	ENSSPAP00000022477	ENSSPAP00000003129	Cell division cycle 42.	Ras homolog family member Ca.	0.719
CDC42	LOC103356330	ENSSPAP00000022477	ENSSPAP00000021013	Cell division cycle 42.	Ras homolog family member Ub.	0.563
CDC42	LOC103356837	ENSSPAP00000022477	ENSSPAP00000018484	Cell division cycle 42.	Uncharacterized protein.	0.817
CDC42	LOC103357909	ENSSPAP00000022477	ENSSPAP00000016233	Cell division cycle 42.	Uncharacterized protein.	0.719
CDC42	LOC103358261	ENSSPAP00000022477	ENSSPAP00000002794	Cell division cycle 42.	Rho family GTPase 1b.	0.654
CDC42	LOC103360972	ENSSPAP00000022477	ENSSPAP00000024331	Cell division cycle 42.	Uncharacterized protein.	0.719
CDC42	LOC103362809	ENSSPAP00000022477	ENSSPAP00000005998	Cell division cycle 42.	Uncharacterized protein.	0.720
CDC42	LOC103367639	ENSSPAP00000022477	ENSSPAP00000028128	Cell division cycle 42.	Uncharacterized protein.	0.719
CDC42	LOC103370959	ENSSPAP00000022477	ENSSPAP00000030361	Cell division cycle 42.	Ras homolog family member Q.	0.672
CDC42	LOC103374076	ENSSPAP00000022477	ENSSPAP00000008479	Cell division cycle 42.	Uncharacterized protein.	0.720
CDC42	LOC103376111	ENSSPAP00000022477	ENSSPAP00000024533	Cell division cycle 42.	Uncharacterized protein.	0.750
CDC42	RAC1	ENSSPAP00000022477	ENSSPAP00000012458	Cell division cycle 42.	Rac family small GTPase 1.	0.750
CDC42	RHOB	ENSSPAP00000022477	ENSSPAP00000030572	Cell division cycle 42.	Ras homolog family member B.	0.719
CDC42	RND1	ENSSPAP00000022477	ENSSPAP00000021797	Cell division cycle 42.	Rho family GTPase 1.	0.654
CDC42	rac2	ENSSPAP00000022477	ENSSPAP00000006455	Cell division cycle 42.	Uncharacterized protein.	0.750
CDC42	rac3	ENSSPAP00000022477	ENSSPAP00000001674	Cell division cycle 42.	Rac family small GTPase 3b.	0.750
CDC42	rhof	ENSSPAP00000022477	ENSSPAP00000020531	Cell division cycle 42.	Ras homolog family member F.	0.634