(24 nodes) RNA recognition motif domain, eukaryote network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PUF60	Poly-U binding splicing factor b. (540 aa)
	tial1	TIA1 cytotoxic granule-associated RNA binding protein-like 1. (392 aa)
	htatsf1	HIV-1 Tat specific factor 1. (455 aa)
	elavl3	ELAV-like protein; Belongs to the RRM elav family. (344 aa)
	rbm17	RNA binding motif protein 17. (421 aa)
	LOC103360571	Uncharacterized protein. (582 aa)
	tia1	Uncharacterized protein. (364 aa)
	LOC103366163	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
	LOC103375213	RRM domain-containing protein. (258 aa)
	LOC103352857	U2 small nuclear RNA auxiliary factor 1. (234 aa)
	LOC103363951	RRM domain-containing protein. (214 aa)
	LOC103362264	Cytotoxic granule-associated RNA binding protein 1, like. (386 aa)
	rbmx	RNA binding motif protein X-linked. (393 aa)
	pabpc4	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
	srsf2	RRM domain-containing protein. (219 aa)
	zrsr2	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (592 aa)
	rbm14	RNA binding motif protein 14a. (553 aa)
	LOC103361283	Uncharacterized protein. (230 aa)
	cnot4	CCR4-NOT transcription complex, subunit 4a. (798 aa)
	zcrb1	Zinc finger CCHC-type and RNA binding motif 1. (224 aa)
	LOC103364803	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	LOC103371419	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
	LOC103372164	Uncharacterized protein. (510 aa)
	cirbp	Cold inducible RNA binding protein b. (162 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103352857	LOC103360571	ENSSPAP00000007471	ENSSPAP00000005452	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.460
LOC103352857	LOC103361283	ENSSPAP00000007471	ENSSPAP00000015017	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.932
LOC103352857	LOC103362264	ENSSPAP00000007471	ENSSPAP00000010844	U2 small nuclear RNA auxiliary factor 1.	Cytotoxic granule-associated RNA binding protein 1, like.	0.630
LOC103352857	LOC103363951	ENSSPAP00000007471	ENSSPAP00000008496	U2 small nuclear RNA auxiliary factor 1.	RRM domain-containing protein.	0.840
LOC103352857	LOC103366163	ENSSPAP00000007471	ENSSPAP00000006829	U2 small nuclear RNA auxiliary factor 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.993
LOC103352857	LOC103375213	ENSSPAP00000007471	ENSSPAP00000007050	U2 small nuclear RNA auxiliary factor 1.	RRM domain-containing protein.	0.787
LOC103352857	cirbp	ENSSPAP00000007471	ENSSPAP00000030699	U2 small nuclear RNA auxiliary factor 1.	Cold inducible RNA binding protein b.	0.511
LOC103352857	rbm17	ENSSPAP00000007471	ENSSPAP00000003093	U2 small nuclear RNA auxiliary factor 1.	RNA binding motif protein 17.	0.522
LOC103352857	rbmx	ENSSPAP00000007471	ENSSPAP00000011306	U2 small nuclear RNA auxiliary factor 1.	RNA binding motif protein X-linked.	0.512
LOC103352857	srsf2	ENSSPAP00000007471	ENSSPAP00000012812	U2 small nuclear RNA auxiliary factor 1.	RRM domain-containing protein.	0.840
LOC103352857	tia1	ENSSPAP00000007471	ENSSPAP00000005858	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.630
LOC103352857	tial1	ENSSPAP00000007471	ENSSPAP00000000142	U2 small nuclear RNA auxiliary factor 1.	TIA1 cytotoxic granule-associated RNA binding protein-like 1.	0.630
LOC103352857	zcrb1	ENSSPAP00000007471	ENSSPAP00000017767	U2 small nuclear RNA auxiliary factor 1.	Zinc finger CCHC-type and RNA binding motif 1.	0.460
LOC103352857	zrsr2	ENSSPAP00000007471	ENSSPAP00000014012	U2 small nuclear RNA auxiliary factor 1.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.464
LOC103360571	LOC103352857	ENSSPAP00000005452	ENSSPAP00000007471	Uncharacterized protein.	U2 small nuclear RNA auxiliary factor 1.	0.460
LOC103360571	LOC103361283	ENSSPAP00000005452	ENSSPAP00000015017	Uncharacterized protein.	Uncharacterized protein.	0.460
LOC103360571	LOC103362264	ENSSPAP00000005452	ENSSPAP00000010844	Uncharacterized protein.	Cytotoxic granule-associated RNA binding protein 1, like.	0.594
LOC103360571	LOC103363951	ENSSPAP00000005452	ENSSPAP00000008496	Uncharacterized protein.	RRM domain-containing protein.	0.780
LOC103360571	LOC103364803	ENSSPAP00000005452	ENSSPAP00000019158	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.563
LOC103360571	LOC103366163	ENSSPAP00000005452	ENSSPAP00000006829	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.558