(5 nodes) SUN domain network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103360714	Sad1 and UNC84 domain containing 1. (1106 aa)
	LOC103366132	SUN domain-containing protein. (1324 aa)
	suco	SUN domain containing ossification factor. (1430 aa)
	LOC103371363	SUN domain-containing protein. (631 aa)
	hectd1	HECT domain containing 1. (2533 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103360714	LOC103366132	ENSSPAP00000011834	ENSSPAP00000006902	Sad1 and UNC84 domain containing 1.	SUN domain-containing protein.	0.507
LOC103360714	suco	ENSSPAP00000011834	ENSSPAP00000018790	Sad1 and UNC84 domain containing 1.	SUN domain containing ossification factor.	0.507
LOC103366132	LOC103360714	ENSSPAP00000006902	ENSSPAP00000011834	SUN domain-containing protein.	Sad1 and UNC84 domain containing 1.	0.507
LOC103366132	LOC103371363	ENSSPAP00000006902	ENSSPAP00000023666	SUN domain-containing protein.	SUN domain-containing protein.	0.507
LOC103371363	LOC103366132	ENSSPAP00000023666	ENSSPAP00000006902	SUN domain-containing protein.	SUN domain-containing protein.	0.507
LOC103371363	suco	ENSSPAP00000023666	ENSSPAP00000018790	SUN domain-containing protein.	SUN domain containing ossification factor.	0.507
suco	LOC103360714	ENSSPAP00000018790	ENSSPAP00000011834	SUN domain containing ossification factor.	Sad1 and UNC84 domain containing 1.	0.507
suco	LOC103371363	ENSSPAP00000018790	ENSSPAP00000023666	SUN domain containing ossification factor.	SUN domain-containing protein.	0.507