(70 nodes) C-type lectin, conserved site network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLEC18A	C-type lectin domain family 18 member A. (340 aa)
	LOC103375085	Si:dkey-241l7.2. (173 aa)
	LOC103375084	C-type lectin domain-containing protein. (158 aa)
	LOC103361572	Collectin sub-family member 12. (768 aa)
	ENSSPAP00000000413	Uncharacterized protein. (239 aa)
	LOC103354937	C-type lectin domain-containing protein. (222 aa)
	clec11a	C-type lectin domain containing 11A. (270 aa)
	clec2d	C-type lectin domain-containing protein. (232 aa)
	ENSSPAP00000029389	Uncharacterized protein. (438 aa)
	ENSSPAP00000029561	C-type lectin domain-containing protein. (246 aa)
	ENSSPAP00000030020	C-type lectin domain-containing protein. (151 aa)
	LOC103368224	Uncharacterized protein. (483 aa)
	LOC103368243	C-type lectin domain-containing protein. (206 aa)
	ENSSPAP00000030756	C-type lectin domain-containing protein. (207 aa)
	ENSSPAP00000030780	Uncharacterized protein. (308 aa)
	LOC103360385	C-type lectin domain-containing protein. (216 aa)
	ENSSPAP00000014152	C-type lectin domain-containing protein. (162 aa)
	selp	Selectin P. (612 aa)
	LOC103358956	C-type lectin domain-containing protein. (312 aa)
	ENSSPAP00000012691	C-type lectin domain-containing protein. (212 aa)
	LOC103358168	C-type lectin domain-containing protein. (307 aa)
	LOC103358151	C-type lectin domain-containing protein. (270 aa)
	ENSSPAP00000011723	C-type lectin domain-containing protein. (195 aa)
	LOC103375842	Uncharacterized protein. (249 aa)
	LOC103364463	Uncharacterized protein. (250 aa)
	ENSSPAP00000009107	Uncharacterized protein. (242 aa)
	LOC103366219	Brevican. (1126 aa)
	ENSSPAP00000008595	C-type lectin domain-containing protein. (141 aa)
	ENSSPAP00000007467	Uncharacterized protein. (242 aa)
	pla2r1	Phospholipase A2 receptor 1. (1489 aa)
	LOC103356630	C-type lectin domain family 3, member Bb. (200 aa)
	ENSSPAP00000003679	C-type lectin domain-containing protein. (145 aa)
	ENSSPAP00000003662	C-type lectin domain-containing protein. (185 aa)
	ENSSPAP00000003145	C-type lectin domain-containing protein. (199 aa)
	ENSSPAP00000003099	C-type lectin domain-containing protein. (170 aa)
	ENSSPAP00000003083	Uncharacterized protein. (341 aa)
	LOC103367189	C-type lectin domain-containing protein. (463 aa)
	LOC103367188	C-type lectin domain-containing protein. (463 aa)
	LOC103371092	C-type lectin domain-containing protein. (278 aa)
	SELE	Uncharacterized protein. (637 aa)
	LOC103373034	Uncharacterized protein. (231 aa)
	ENSSPAP00000014419	C-type lectin domain-containing protein. (146 aa)
	ENSSPAP00000014435	C-type lectin domain-containing protein. (155 aa)
	mrc1	Mannose receptor, C type 1a. (1434 aa)
	COLEC12	Collectin subfamily member 12. (740 aa)
	ENSSPAP00000015181	C-type lectin domain-containing protein. (391 aa)
	ENSSPAP00000015571	C-type lectin domain-containing protein. (227 aa)
	LOC103375349	C-type lectin domain-containing protein. (263 aa)
	ENSSPAP00000016506	C-type lectin domain-containing protein. (151 aa)
	ENSSPAP00000016838	Uncharacterized protein. (336 aa)
	ENSSPAP00000016871	C-type lectin domain-containing protein. (141 aa)
	clec3b	C-type lectin domain family 3, member Ba. (198 aa)
	LOC103360854	Mannose receptor, C type 1b. (1454 aa)
	LOC103360856	Mannose receptor, C type 1b. (1429 aa)
	LOC103353611	Asialoglycoprotein receptor-like 1. (234 aa)
	ENSSPAP00000018913	C-type lectin domain-containing protein. (201 aa)
	ENSSPAP00000019430	C-type lectin domain-containing protein. (174 aa)
	ENSSPAP00000019498	C-type lectin domain-containing protein. (174 aa)
	LOC103364647	C-type lectin domain-containing protein. (215 aa)
	LOC103364648	C-type lectin domain-containing protein. (273 aa)
	LOC103366938	C-type lectin domain-containing protein. (178 aa)
	ENSSPAP00000023687	Uncharacterized protein. (272 aa)
	ENSSPAP00000024275	C-type lectin domain-containing protein. (156 aa)
	colec11	Collectin sub-family member 11. (273 aa)
	LOC103363723	Uncharacterized protein. (1197 aa)
	LOC103373857	Uncharacterized protein. (1704 aa)
	ENSSPAP00000026684	C-type lectin domain-containing protein. (149 aa)
	CLEC3A	C-type lectin domain family 3 member A. (188 aa)
	ENSSPAP00000026937	C-type lectin domain-containing protein. (141 aa)
	acan	Aggrecan b. (1297 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLEC3A	LOC103361572	ENSSPAP00000026863	ENSSPAP00000000924	C-type lectin domain family 3 member A.	Collectin sub-family member 12.	0.569
COLEC12	LOC103358168	ENSSPAP00000014727	ENSSPAP00000012647	Collectin subfamily member 12.	C-type lectin domain-containing protein.	0.447
COLEC12	LOC103358956	ENSSPAP00000014727	ENSSPAP00000012715	Collectin subfamily member 12.	C-type lectin domain-containing protein.	0.447
COLEC12	LOC103361572	ENSSPAP00000014727	ENSSPAP00000000924	Collectin subfamily member 12.	Collectin sub-family member 12.	0.865
COLEC12	clec2d	ENSSPAP00000014727	ENSSPAP00000028763	Collectin subfamily member 12.	C-type lectin domain-containing protein.	0.758
COLEC12	colec11	ENSSPAP00000014727	ENSSPAP00000025265	Collectin subfamily member 12.	Collectin sub-family member 11.	0.839
ENSSPAP00000008595	LOC103361572	ENSSPAP00000008595	ENSSPAP00000000924	C-type lectin domain-containing protein.	Collectin sub-family member 12.	0.569
ENSSPAP00000012691	ENSSPAP00000015181	ENSSPAP00000012691	ENSSPAP00000015181	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.494
ENSSPAP00000012691	LOC103361572	ENSSPAP00000012691	ENSSPAP00000000924	C-type lectin domain-containing protein.	Collectin sub-family member 12.	0.577
ENSSPAP00000012691	LOC103364647	ENSSPAP00000012691	ENSSPAP00000019892	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.640
ENSSPAP00000012691	LOC103367189	ENSSPAP00000012691	ENSSPAP00000002963	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.494
ENSSPAP00000012691	colec11	ENSSPAP00000012691	ENSSPAP00000025265	C-type lectin domain-containing protein.	Collectin sub-family member 11.	0.426
ENSSPAP00000015181	ENSSPAP00000012691	ENSSPAP00000015181	ENSSPAP00000012691	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.494
ENSSPAP00000015181	LOC103358151	ENSSPAP00000015181	ENSSPAP00000012631	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.494
ENSSPAP00000015181	LOC103358168	ENSSPAP00000015181	ENSSPAP00000012647	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.447
ENSSPAP00000015181	LOC103358956	ENSSPAP00000015181	ENSSPAP00000012715	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.447
ENSSPAP00000015181	LOC103361572	ENSSPAP00000015181	ENSSPAP00000000924	C-type lectin domain-containing protein.	Collectin sub-family member 12.	0.596
ENSSPAP00000015181	clec2d	ENSSPAP00000015181	ENSSPAP00000028763	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.761
ENSSPAP00000015571	LOC103358168	ENSSPAP00000015571	ENSSPAP00000012647	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.481
ENSSPAP00000015571	LOC103358956	ENSSPAP00000015571	ENSSPAP00000012715	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.473